Database Commons a catalog of biological databases

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Data type:

Database name Data type(s) Major organism(s) Location Citation* Status z-index
NCBI Gene - NCBI Gene United States 1802unstable47.13
euL1db - European database of L1HS retrotransposon insertions in humans France 2unstable0.61
Islander - Database of Genomic Islands United States 4unstable1.16
MethBank - Methylation Bank China 6alive2.00
DBTSS - DataBase of Transcriptional Start Sites Japan 767alive47.94
EPD - Eukaryotic Promoter Database Switzerland 32unstable8.32
Gbshape - Genome Browser Database for DNA Shape Annotations United States 8alive2.67
TTSMI - triplex target DNA site Mapping and Integration database Singapore 1alive0.33
UniPROBE - Universal PBM Resource for Oligonucleotide Binding Evaluation United States 363alive40.33
lncRNASNP China 17alive5.44
InParanoid - ortholog groups with inparalogs Sweden 1253alive95.42
OMA - The Orthologous Matrix project United Kingdom 153unstable13.99
OrthoDB - Orthologs Database Switzerland 468unstable39.78
MBGD - Microbial Genome Database Japan 279alive18.23
REBASE - The Restriction Enzyme Database United States 927alive61.80
Platinum - Protein-ligand affinity change upon mutation United Kingdom 0unstable0.00
PoSSuM - Pocket Similarity Search using Multiple-Sketches Japan 24alive3.96
Viral Genomes - Viral Genomes United States 0unstable0.00
ViRBase - virus-host ncRna interaction database China 0alive0.00
VirHostNet - Virus-Host Network France 93unstable8.89
RefSeq genome - Reference Sequence Based on Genomes United States 211unstable24.62
MyMpn - The Mycoplasma pneumoniae database Spain 11unstable3.37
PAIDB - Pathogenicity Island Database Korea Rep. 110unstable7.62
DB-AT - Database of Apicomplexa Transcriptomes Germany 2alive0.67
PHI-base - Pathogen-Host Interactions database United Kingdom 340alive28.05
PomBase United Kingdom 131unstable14.41
Ensembl - Ensembl United Kingdom 12662alive783.46
UCSC Genome Browser - University of California, Santa Cruz Genome Browser United States 6429alive424.31
Genomicus - Genomes in Evolution France 182alive22.52
FlyBase - Database of Drosophila Genes & Genomes United States 3836alive159.83 United States 12alive4.00
VectorBase - Bioinformatics Resource for Invertebrate Vectors of Human Pathogens United States 382unstable6.60
i5k Workspace@NAL United States 10unstable2.43
iBeetle-Base - A database of Tribolium RNAi phenotypes Germany 0alive0.00
MGD - Mouse Genome Database United States 2658alive126.57
RGD - Rat Genome Database United States 60unstable15.00
SuperFly Spain 0alive0.00
Xenbase - Xenopus model organism database Canada 214alive21.40
DoGSD - Dog Genome SNP Database China 5alive1.62
AFND - Allele Frequency Net Database United Kingdom 39alive7.80
GRASP - Genome-Wide Repository of Associations between SNPs and Phenotypes United States 28unstable2.52
COSMIC - Catalogue of Somatic Mutations in Cancer United Kingdom 4018unstable223.86
The UCSC Cancer Genomics Browser United States 187unstable3.95
MTB - Mouse Tumor Biology System United States 105alive6.18
arrayMap Switzerland 0unstable0.00
BCCTBbp - Breast Cancer Campaign Tissue Bank Bioinformatics Portal United Kingdom 3alive0.97
CCGD - Candidate Cancer Gene Database United States 8alive2.67
CMPD - Cancer Mutant Proteome Database Taiwan 0unstable0.00
MethHC - A database of DNA Methylation and gene expression in Human Cancer Taiwan 18alive5.94
VaDE - VarySysDB Disease Edition Japan 0alive0.00
DAA - Digital Ageing Atlas United Kingdom 9alive3.00
DDMGD - database of diseases associated gene methylation in different species Saudi Arabia 2unstable0.45
Dr.VIS - Viral integration sites China 14unstable1.17
EpilepsyGene - EpilepsyGene database China 3unstable0.60
Organ system heterogeneity DB - A Database for the Visualization of Phenotypes at the Organ System Level Germany 0alive0.00
PLAZA - An online platform for plant comparative genomics Belgium 196unstable13.72
Plastid-LCGbase - The Plastid Lineage-based Conserved Gene-pair Database China 2unstable0.33
AraNet - Probabilistic Functional Gene Network of Arabidopsis thaliana Korea Rep. 0unstable0.00
Araport - Arabidopsis Information Portal United States 9unstable0.57
CATdb - Complete Arabidopsis Transcriptome database France 0alive0.00
RiceVarMap - Rice Variation Map China 9alive2.97
SNP-Seek database - SNP-Seek Database Philippines 53unstable9.54
CGH - Coffee Genome Hub France 3alive1.00
SGN - Sol Genomics Network United States 0unstable0.00
HGNC - HUGO Gene Nomenclature Committee United Kingdom 612unstable39.17
NCBI Taxonomy Database - NCBI Taxonomy Database
United States 13unstable1.52
diArk - Database for Eukaryotic Genome Research Germany 16unstable1.16
United Kingdom 13alive4.29
GeneFriends - GeneFriends:RNAseq United Kingdom 31alive5.17
ImmuCo - a database of gene Co-expression and Correlation in Immune cells China 4unstable1.13
Cyclebase - Cell-cycle Database Denmark 105unstable6.62
VCGDB - Virtual Chinese Genome Database China 1alive0.25
uORFdb - upstream open reading frames database Germany 22unstable4.68
NDB - Nucleic Acid Database
United States 28alive6.93
JASPAR Canada 2924alive200.50
TFBSshape - DNA shape features of transcription factor binding sites United States 39unstable8.97
CollecTF - Database of Transcription Factor Binding Sites United States 31dead0.00
YEASTRACT - Yeast Search for Transcriptional Regulators And Consensus Tracking Portugal 793alive65.42
OnTheFly - TF and TFBS On The Fly United States 9unstable0.58
BloodChIP Australia 11unstable0.80
DPRP - Database of Phenotype-specific Regulatory Programs Taiwan 0alive0.00
eggNOG - Database of Orthologous Groups and Functional Annotation
Germany 107alive26.48
Laminin-database Brazil 4unstable0.94
CentrosomeDB Spain 58unstable5.48
Germany 43alive4.30
MetaCyc database - A database describing metabolic pathways and enzymes from all domains of life.
United States 199unstable17.91
Ensembl Genomes - Ensembl Genome Annotation System United Kingdom 293alive36.63
IMG - Integrated Microbial Genomes United States 568unstable17.04
DEG - Database of Essential Genes China 573alive40.93
EBI Metagenomics - EBI Metagenomics
United Kingdom 32unstable4.88
GGBN - Global Genome Biodiversity Network Germany 28alive6.93
MetaRef - A pan-genomic database for microbial genomics Italy 9unstable1.62
POGO-DB - Database of Pairwise-comparisons Of Genomes and universal Orthologous genes United States 4alive0.99
DOOR - Database of Prokaryotic Operons United States 218unstable23.01
Virus Variation - Virus Variation United States 21unstable1.78
CyanoBase Japan 36alive8.82
RhizoBase Japan 19unstable4.51
HoPaCI-DB - The Host-Pseudomonas and Coxiella Interaction database France 3unstable0.70
PortEco - potral for E. coli research United States 13alive3.15
SporeWeb Netherlands 11alive2.75
MycoCosm - The fungal genomics resource United States 93unstable14.65
AspGD - Aspergillus Gene Database United States 117alive19.31
CGD - Candida Genome Database United States 167alive27.56
SGD - Saccharomyces Genome Database United States 772alive128.67
YeastNet - Probabilistic Functional Gene Network of Saccharomyces cerevisiae Korea Rep. 17unstable3.31
BacMet - Antibacterial Biocide and Metal Resistance Genes Database Sweden 16unstable3.80
RefSeq - Reference Sequence Database United States 6794unstable132.11
VEGA - Vertebrate Genome Annotation United Kingdom 368unstable25.48
WormBase - WormBase Canada 2150alive126.47
WormQTLHD - A Web Database for Linking Human Disease to Natural Variation Data in C. elegans. Netherlands 27alive5.40
IMPC - International Mouse Phenotyping Consortium United Kingdom 44alive10.89
MPD - Mouse Phenome Database United States 201unstable10.96
GeneProf - GeneProf United Kingdom 44unstable5.43
CCDS - Consensus Coding Sequence United States 394unstable8.32
LRG - Locus Reference Genomic United Kingdom 155alive19.38
ExoLocator - ExoLocator Singapore 5unstable1.05
AgeFactDB - Ageing Factor Database Germany 8alive2.00
PhylomeDB - Phylome DataBase Spain 241alive24.10
dbPSHP - Database of Positive Selection across Human Populations Hong Kong SAR China 16alive4.00
Selectome - A Database of Positive Selection Switzerland 43unstable3.92
TreeFam - database of phylogenetic trees United Kingdom 529alive44.08
Expression Atlas - Expression Atlas United Kingdom 90unstable14.18
CellFinder Germany 5alive1.25
dbGaP - Database of Genotypes and Phenotypes United States 85unstable7.44
ClinVar - variation-phenotype relationships United States 944unstable82.60
DGV - Database of Genomic Variants Canada 233alive58.25
DECIPHER - Database of Chromosomal Imbalance and Phenotype in Humans using Ensembl Resources. United Kingdom 41unstable1.95
NECTAR - Non-synonymous Enriched Coding muTation ARchive United Kingdom 0alive0.00
FINDbase - Frequency of Inherited Disorders Database Greece 111alive10.09
InvFEST - Human Polymorphic Inversion DataBase Spain 14alive3.50
rSNPBase - A Database for Curated Regulatory SNPs China 35alive8.75
canSAR United Kingdom 70unstable10.27
DriverDB - database for cancer driver gene/mutation Taiwan 18alive4.41
Progenetix Switzerland 179unstable6.53
HbVar - Human Hemoglobin Variants and Thalassemias United States 510alive36.43
P-MITE - Plant Miniature Inverted Transposable Element database China 24unstable5.70
PlantTFDB - Plant Transcription Factor Database China 684unstable49.25
ppdb - plantpromoterdb Japan 19alive4.70
Gramene - A comparative resource for plants United States 79alive19.75
LSD - Leaf Senescence DataBase China 42unstable5.28
RiceWiki China 7alive1.70
CottonGen United States 42unstable9.87
GDR - Genome Database for Rosaceae United States 343unstable22.30
MitoBreak - The mitochondrial DNA breakpoints database Portugal 4alive0.98
ENCODE - Encyclopedia of DNA Elements United States 2053unstable27.86
Dfam - Dfam United States 58unstable8.93
SINEBase - A Database and Tools for SINE Analysis Russian Federation 27alive5.35
DoriC - Database of oriC regions in Bacterial and Archaeal genomes China 111unstable8.78
Non-B DB - A Database for Integrated Annotations and Analysis of non-B DNA Forming Motifs United States 68dead0.00
UCNEbase - A database of ultraconserved non-coding elements and genomic regulatiory blocks Switzerland 20unstable3.12
APPRIS - Annotating Principal Splice Isoforms Spain 39alive7.80
HEXEvent - Human EXon splicing Events database United States 14alive2.72
GeneTack database - GeneTack database United States 6unstable0.26
Factorbook - Factorbook United States 61unstable2.20
CTCFBSDB - CTCF Binding Sites and Genome Organization Database United States 118alive11.68
HOCOMOCO - Homo Sapiens Comprehensive Model Collection Russian Federation 62alive12.40
SwissRegulon - A Database of Genome-wide Annotations of Regulatory Sites Switzerland 118unstable5.15
NCBI Epigenomics - NCBI Epigenomics United States 51unstable1.46
SwissSidechain - A Molecular and Structural Database of Non-natural Sidechains
Switzerland 16unstable2.50
OrtholugeDB - A Bacterial and Archaeal Orthology Resource Canada 17alive3.37
The Genome Properties database - The Genome Properties database United States 65unstable12.22
ClusterMine360 Canada 26alive5.15
DoBISCUIT - Database of BIoSynthesis clusters CUrated and InTegrated
Japan 27alive5.40
KIDFamMap - Kinase-inhibitor-disease family map Taiwan 6alive1.20
SIFTS - Structure Integration with Function, Taxonomy and Sequence
United Kingdom 50alive10.00
NPIDB - Nucleic acid-Protein Interaction DataBase
Russian Federation 46alive4.14
DGA - Database of Disease and Gene Annotations China 23unstable3.59
United States 99alive19.80 - Gene Annotation Query as a Service
United States 99alive19.80
HBVdb - Hepatitis B Virus database France 16unstable1.63
PaVE - PapillomaVirus Episteme United States 83unstable4.65
PR2 - Protist Ribosomal Reference Database France 80alive16.00
EcoGene - The EcoGene Database of Escherichia coli Sequence and Function United States 312unstable13.00
ECMDB - Escherichia coli Metabolome Database Canada 32alive6.40
MicroScope - Microbial Genome Annotation & Analysis Platform France 195alive38.61
metaMicrobesOnline - Phylogenomic Analysis of Microbial Communities United States 5alive0.99
SecReT4 - Type IV Secretion System Resource China 21unstable3.95
SEVA - Standard European Vector Architecture Spain 87alive17.40
dictyBase - Database for Dictyostelium Discoideum United States 128alive14.08
EuPathDB - The Eukaryotic Pathogen database United States 168unstable15.96
GenColors - GenColors Germany 17alive1.29
LAMP - Library of Apicomplexan Metabolic Pathways United Kingdom 19alive3.80
CFGP - Comparative Fungal Genomics Platform Korea Rep. 102unstable4.79
NetwoRx - Connecting Drugs to Networks and Phenotypes in Saccharomyces Cerevisiae Canada 6alive1.19
SchistoDB - Schistosoma Genomic Resources Brazil 94alive10.13
WDDD - Worm Developmental Dynamics Database Japan 4alive0.79
FlyAtlas - Drosophila gene expression atlas United Kingdom 983alive89.36
MonarchBase - The Monarch Butterfly Genome Database United States 23alive4.42
WholeCellKB - WholeCellKB United States 16alive3.20
OikoBase - A curated genome expression database of Oikopleura dioica Norway 16alive3.07
ZFIN - Zebrafish Information Network United States 899alive42.38
ZInC - Zebrafish Insertional Collection United States 15unstable1.02
QTLdb - Animal QTL database United States 143unstable16.59
H2DB - Heritability Database Annotating with Trait-Associated Genomic Loci Japan 1unstable0.19
RhesusBase China 12unstable2.26
H-InvDB - H-Invitational Database Japan 109alive10.90
Atlas of Genetics and Cytogenetics in Oncology and Haematology - Atlas of Genetics and Cytogenetics in Oncology and Haematology France 1188alive66.00
GTR - National Institutes of Health Genetic Testing Registry United States 33unstable2.31
dbVar - Database of Genomic Structural Variation United States 41unstable2.79
DGVa - The Database of Genomic Variants archive
United Kingdom 41unstable5.25
TP53 mutation database France 30unstable4.98
TSGene - tumor suppressor gene database United States 89unstable3.03
HemaExplorer Denmark 49alive7.84
INTERFEROME Australia 224alive23.89
Clone DB
United States 6unstable0.42
MIPS PlantsDB - Plant Genome and Systems Biology Germany 43alive8.60
PIECE - Plant Intron Exon Comparison and Evolution database United States 27unstable2.11
PRGdb Italy 98unstable2.45
TropGeneDB - tropical gene database France 34alive2.38
RGKbase - Rice Genome Knowledgebase China 9unstable0.88
RiceXPro - Rice Expression Profile Database Japan 189unstable23.22
IMGT/HLA United Kingdom 370unstable47.36
InnateDB Canada 339unstable29.83
DOR - DDBJ Omics Archive
Japan 35unstable4.43
DDBJ BioProject - The DNA Data Bank of Japan BioProject
Japan 35unstable4.43
GeneDB - GeneDB United Kingdom 92alive15.18
IMG/M - Integrated Microbial Genomes and Metagenomes United States 605unstable11.49
MAPPER2 - Multi-genome Analysis of Positions and Patterns of Elements of Regulation United States 116unstable5.53
YeTFaSCo - Yeast Transcription Factor Specificity Compendium Canada 31alive5.17
DBG2I - Database for bacterial group II introns Canada 37unstable2.47
VIRsiRNAdb - database of viral siRNA/shRNA India 17alive2.83
ConoServer - Database for Conopeptides Australia 205unstable18.04
NucleaRDB - Information System for Nuclear Receptors
Netherlands 209unstable2.34
Polbase - Polymerase Database United States 8unstable0.25
MINAS - Metal Ions in Nucleic Acids
Switzerland 15alive2.50
MMDB - Macromolecular Database
United States 79unstable4.61
GOLD - Genomes On Line Database United States 1646unstable26.06
HFV - Hemorrhagic Fever Viruses (HFV) Database United States 9unstable1.34
ViPR - virus pathogene resourse United States 57alive9.50
BacMap Canada 47alive3.62
ICEberg - ICEberg is a web-based resource for integrative and conjugative elements found in Bacteria. China 52unstable8.06
ProOpDB - Prokaryotic Operon DataBase Mexico 61alive9.96
ProPortal - Prochlorococcus Portal United States 18unstable2.70
VFDB - Virulence Factor Database China 448alive34.46
CADRE - Central Aspergillus Resource United Kingdom 92unstable4.80
FungiDB - FungiDB United States 47alive7.68
OriDB - DNA Replication Origin Database United Kingdom 159alive14.45
PhenoM - Phenomics of yeast Mutants Canada 196unstable22.30
FlyRNAi - Drosophila RNAi screening center database United States 104unstable5.46
Nematode - United States 163alive11.64
Predictive networks United States 24unstable3.56
Newt-omics - A Comprehensive Repository for Omics Data from the Newt notophthalmus viridescens Germany 20alive3.33
OGEE - Online GEne Essentiality database China 77alive12.83
zfishbook - zebrafish book United States 3alive0.50
HGPD - Human Gene and Protein Database Japan 36alive4.00
HaploReg United States 457unstable47.22
SNPeffect - Single Nucleotide Variants Belgium 261alive20.08
IGDB.NSCLC - Integrated Genomic Database of Non-Small Cell Lung Carcinoma Taiwan 10alive1.65
NCG - Network of Cancer Genes Italy 51alive8.50
UMD-BRCA1/BRCA2 - Universal mutation database-BRCA1/BRCA2 France 23dead0.00
ADHDgene - Database for Attention Deficit Hyperactivity Disorder China 27alive4.45
ALFRED - The ALlele FREquency Database United States 74unstable1.43
AutismKB China 74unstable8.88
BGMUT - Blood Group Antigen Gene Mutation Database United States 43unstable2.51
DiseaseMeth - Human Disease Methylation Database China 56alive8.96
DistiLD - Database of Diseases and Traits in Linkage Disequilibrium Denmark 17alive2.83
GWASdb - GWASdb Hong Kong SAR China 82alive13.67
GeneSigDB - Gene Signature DataBase United States 123unstable8.30
modMine - A Data Warehouse for the modENCODE Project United Kingdom 50unstable7.83
OligoGenome - Stanford Human Oligo Genome Project United States 3unstable0.43
PrimerBank United States 1063unstable64.49
HmtDB - Human Mitochondrial DataBase Italy 99unstable4.87
MitoMiner - A database of the mitochondrial proteome
United Kingdom 97alive10.56
MitoZoa - MitoZoa Italy 66dead0.00
Phytozome - The Plant Genomics Resource United States 746unstable23.62
GABI-Kat SimpleSearch - GABI-Kat SimpleSearch Germany 206alive13.73
LegumeIP - An Integrative Platform to Study Gene Function and Genome Evolution in Legumes United States 27alive4.37
DNAtraffic - DNAtraffic Poland 3unstable0.34
MethylomeDB - database containing genome-wide brain DNA methylation profiles United States 33unstable1.87
Gene Wiki - Gene Wiki United States 113unstable2.68
EcoliWiki - EcoliWiki United States 24unstable3.08
Xanthusbase - Myxococcus xanthus databse United States 16unstable0.38
959 Nematode Genomes United Kingdom 47unstable6.82
SNPedia United States 67unstable9.05
KGVDB Korea Rep. 4dead0.02
GyDB - The Gypsy Database Spain 127alive12.45
ASPicDB - Alternative Splicing Database
Italy 75dead0.00
DBASS - Databases of Aberrant 3'-ss and 5'-ss in Human Disease Genes Italy 19alive2.71
MPromDb - Mammalian Promoter Database United States 79dead0.00
FlyFactorSurvey - Database of DNA binding specificities for Drosophila transcription factors (TFs) United States 78alive11.14
REDfly - Regulatory Element Database for Drosophila United States 284alive23.43
WebGeSTerDB - Web Genome scanner fot terminators database India 33alive4.62
RepTar - A Database of Inverse miRNA Target Predictions Israel 33unstable3.44
tRNADB-CE - The tRNA Gene DataBase Curated manually by experts
Japan 69alive7.59
AgBase United States 301alive25.08
IGRhCellID - Integrated Genomic Resources of Human Cell Lines for Identification Taiwan 2alive0.28
ODB - Operon DataBase Japan 79unstable6.85
PhEVER - phylogenetic exploration of virues' evolutionary relationships France 4unstable0.06
Pseudomonas Genome DB Canada 565alive62.78
PSSRdb - Polymorphic Simple Sequence Repeats database India 6unstable0.36
TADB - Toxin-antitoxin Data Base China 94unstable12.62
AmoebaDB - Amoeba Genome Resource United States 35alive4.90
MicrosporidiaDB - Microsporidia Genomics Resource United States 35alive4.90
ParameciumDB - Paramecium Database France 128alive11.52
FGDB - Fusarium graminearum Genome Databas Germany 128unstable9.17
YPA - Yeast Promoter Atlas Taiwan 25unstable1.82
HGD - The Hymenoptera Genome Database United States 121alive17.11
KaPPA-View4 - Kazusa Plant Pathway Viewer Japan 36alive5.14
DroID - Drosophila Interactions Database United States 183alive18.12
RegPhos - Regulatory Network in Protein Phosphorylation Taiwan 49alive6.79
cBARBEL - Catfish Genome Database United States 26unstable1.37
BGD - Bovine Genome Database United States 42alive5.14
IKMC - The International Knockout Mouse Consortium United States 62unstable2.57
TIARA - Total Integrated Archive of Short-Read and Array database Korea Rep. 15alive2.12
DAnCER - Disease Annotated Chromatin Epigenetics Resource Canada 17unstable2.26
dbCRID - Chromosomal Rearrangements In Diseases United States 23unstable0.46
dbDNV - DNV Database Taiwan 11unstable1.35
IGDD India 13unstable1.50
VnD - Variations and Drugs Korea Rep. 7dead0.00
CaSNP China 17unstable1.31
CCDB - Cervical Cancer Gene Database India 42alive6.00
DDPC - Dragon Database of Genes associated with Prostate Cancer South Africa 26unstable3.49
CADgene - Coronary Artery Disease Gene Database China 42unstable5.16
T1DBase - type 1 diabetes susceptibility Base United Kingdom 178unstable4.24
MitoGenesisDB - Mitochondrial Spatio-Temporal Expression Database France 3alive0.42
GreenPhylDB - GreenPhylDB France 130unstable2.60
NIASGBdb - NIAS Genebank database Japan 14unstable1.70
AGRIS - Arabidopsis Gene Regulatory Information Server United States 701unstable41.59
AHD2 - Arabidopsis Hormone Database 2.0 China 60unstable4.33
TFGD - Tomato Functional Genomics Database United States 46alive6.44
HOMD - The Human Oral Microbiome Database United States 216alive27.00
Shewanella knowledgebase United States 12dead0.00
MRB - Mouse Resource Browser Greece 3alive0.38
CGDSNPdb - Center for Genome Dynamics Single Nucleotide Polymorphism Database United States 7dead0.00
BrainTrap - Fly Brain Protein Trap Database United Kingdom 14alive1.72
TRedD - Tandem Repeats Database United States 12unstable0.52
OpenFluDB - A Database for Human and Animal Influenza Virus Switzerland 17alive2.13
Varietas - Varietas Finland 8dead0.00
AthaMap - Arabidopsis thaliana Map Germany 275alive19.45
GermOnline - GermOnline France 63unstable4.10
GeneCards - GeneCards Israel 900unstable18.45
HyperCAT Norway 20alive2.45
RAC - Repository of Antibiotic Australia 15dead0.00
CPGR - Comprehensive Phytopathogen Genomics Resource United States 10alive1.43
Neisseria Base - A Comparative Genomics Database for Neisseria Meningitidis United States 5dead0.00
ICGC - International Cancer Genome Consortium Data Portal Canada 80dead0.00
SigReannot-mart France 7alive0.99
modENCODE - The model organism Encyclopedia of DNA Elements United States 18alive2.57
The strategies WDK United States 9unstable0.98
TparvaDB - Theileria parva vaccine development Database Kenya 2dead0.00
the CEREALAB database - Cereals genotypic phenotypic source Italy 16unstable1.03
LPS-annotate Canada 8dead0.02
QlicRice - QTL and Loci Interaction Channels in Rice India 6unstable0.22
DFVF - Database of Known Fungal Virulence Factors United States 5alive0.82
MuteinDB - The Mutein Database
Austria 4dead0.00
The gene-specific codon counting database - The gene-specific codon counting database United States 8dead0.00
dbPTB - Database for Preterm Birth United States 16alive2.67
BFGR - Biofuel Feedstock Genomics Resource United States 12alive2.00
TGD Wiki - Tetrahymena genome database Wiki United States 8alive1.33
Aptamer base - Aptamer database
Canada 21unstable1.61
United Kingdom 10dead0.00
RefPrimeCouch - A Reference Gene Primer CouchApp Germany 1unstable0.16
United States 6alive1.20
RAvariome - Rheumatoid Arthritis Genetic Variants Database Japan 4alive0.78
yApoptosis - yeast apoptosis database Sweden 1alive0.20
IQdb - IQ genetic database China 8unstable0.43
metabolicMine - metabolicMine United Kingdom 10dead0.00
BGDB - Bivalent Genes Database China 4unstable0.04
BmTEdb - Bombyx mori Transposable Elements Database China 10unstable1.78
ESCAPE - Embryonic Stem Cell Atlas from Pluripotency Evidence United States 23alive4.60
The Banana Genome Hub France 19alive3.80
RiceSRTFDB - Rice Stress-Responsive Transcription Factor Database India 9alive1.76
hLGDB - The Human lysosome Gene Database Italy 6alive1.19
Variome - Variome Japan 4unstable0.34
YY1TargetDB - Yin Yang 1 Target loci Database Hong Kong SAR China 3alive0.60
T-HOD - Text-mined Hypertension, Obesity and Diabetes candidate gene database Taiwan 9unstable1.53
Nencki Genomics Database - Ensembl Funcgen Enhanced With Intersections, User Data and Genome-wide TFBS Motifs. Poland 5unstable0.82
BBGRE - Brain & Body Genetic Resource Exchange United Kingdom 2dead0.02
GnpIS - Genetic and Genomic Information System France 9unstable0.38
CHD@ZJU - Coronary Heart Disease Research Platform China 7unstable0.69
eFG - Electronic Resource for Fusarium Graminearum China 1alive0.20
dbWFA - Database of Wheat Functional Annotation France 2unstable0.08
Eimeria TDB - The Eimeria Transcript DB Brazil 3alive0.60
pseudoMap Taiwan 10alive2.00
PIPEMicroDB - PIgeonPEa Microsatellite DataBase India 5dead0.00
bc-GenExMiner - Breast Cancer Gene-Expression Miner France 13alive2.60
HGV&TB - Database for Human Genes and Genetic Variants associated with Tuberculosis India 0unstable0.00
ChloroSSRdb - Chloroplastic Simple Sequence Repeats Database India 5unstable1.02
MelGene - Field Synopsis of Genetic Association Studies in Cutaneous Melanoma Greece 4unstable0.69
DEOP - Database on Osmoprotectants and Associated Pathways Saudi Arabia 4unstable0.93
MetaProx - The Database of Metagenomic Proximons Canada 2alive0.50
CarrotDB China 14unstable2.52
LiverCancerMarkerRIF Taiwan 2unstable0.39
FusoBase - online Fusobacterium comparative genomic analysis platform Malaysia 0unstable0.00
LeishMicrosatDB - Database of leishmania genomic sequence repeats India 2unstable0.45
RTeQTL - Real-Time Online Engine for Expression Quantitative Trait Loci
United States 1unstable0.22
IFIM - Integrated Fitness Information for Microbial genes China 4unstable0.65
Osteosarcoma Database - An Osteosarcoma-gene Association Database Germany 4alive0.99
HeteroGenome Russian Federation 2unstable0.47
dbCRY - Cryptochrome Database
Korea Rep. 2unstable0.25
EpimiR - Database of Curated Mutual Regulation Between epigenetic Modifications and miRNAs China 8unstable1.50
DBatVir - the Database of Bat-Associated Viruses China 5alive1.25
BambooGDB - Bamboo Genome Database China 12unstable1.41
ALE-HSA21 - AnaLysis of Expression of HSA21 Italy 5unstable1.15
tbvar - Mycobacterium tuberculosis variome resource India 5unstable1.19
WholeCellSimDB United States 4unstable0.93
ChiloDB - Chilo suppressalis Database China 11unstable1.10
RetinoGenetics China 5unstable1.17
MorusDB - the Morus Genome Database China 4unstable0.71
CancerEST United Kingdom 3alive0.75
Zebrafish GenomeWiki - 'Wiki'-based resource to provide an altruistic shared environment for collective annotation of zebrafish genes India 3unstable0.71
StaphyloBase Malaysia 1unstable0.13
DBM-DB - Diamondback Moth Genome Database China 20unstable3.90
BioCyc database United States 1unstable0.24
BioXpress United States 5unstable0.33
DisGeNET - DisGeNET Spain 185alive23.13
DroughtDB - Drought Stress Gene Database Germany 2alive0.67
PTGBase - Plant Tandem duplicated Genes dataBase China 1unstable0.30
LOTUS-DB - Lotus database China 0unstable0.00
Follicle Online - Follicle Online
China 1dead0.00
GraP - Platform of Functional Genomics Analysis in Gossypium raimondii China 1unstable0.30
RAP-DB - Rice Annotation Project Database Japan 286unstable24.02
3DGD - 3D Genome Database China 6unstable0.67
dbNSFP - database for nonsynonymous SNPs' functional predictions United States 261unstable3.73
MycoRRdb - Mycobacterium Regulatory Region Database India 2alive0.33
NGS catalog - A Database of Next Generation Sequencing Studies in Humans United States 23unstable0.65
PaGenBase - Pattern Gene Database China 8unstable1.46
The HTLV-1 database Brazil 7alive1.17
United States 1unstable0.22
KMeyeDB - Keio Mutation eye Databases Japan 2unstable0.22
PHYMYCO-DB France 15unstable2.35
PIGD - Poaceae Intronless Genes Database China 1unstable0.07
Genevar - GENe Expression VARiation United Kingdom 231unstable23.39
AluHunter United States 4alive0.57
Sinbase - Sesamum indicum database China 14unstable4.25
HTRIdb - Human Transcriptional Regulation Interaction Database Brazil 45unstable5.03
VTCdb - ViTis Co-expression DataBase Australia 10unstable1.70
KONAGAbase - KONAGAbase Japan 19unstable3.31
RARGE II - Arabidopsis Genome Encyclopedia Japan 7alive1.73
RiceFOX - Rice Full-length cDNA Over-expressed Arabidopsis Mutant database Japan 41alive5.74
SyStemCell China 6unstable0.58
MCG - Maize Cell Genomics Database United States 4alive1.33
LegumeTFDB - LegumeTFDB Japan 44unstable1.82
SABRE2 - Systematic consolidation of Arabidopsis and other Botanical REsources Japan 3unstable0.59
microPIR - microRNA-Promoter Interaction Resource Thailand 17alive2.81
seeQTL United States 58unstable7.25
MTTD - Medicago Truncatula Transporter database China 6unstable0.71 - WheatGenome.information Australia 30alive4.95
MirSNP - A collection of human SNPs in predicted miRNA target sites. China 67unstable10.50
MGDB_1 - Microarray Marker Genes Database
Uruguay 4unstable0.31
RadishBase - a genomic and genetic database for radish China 11alive2.20
STPD - salinity tolerant poplar database China 0unstable0.00
miRvar - A comprehensive database for genomic variations in microRNAs India 22unstable2.99
RCPedia - a database of retrocopied genes. Brazil 5unstable0.53
CIG-DB - Cancer-related Immunological Gene Database Japan 3unstable0.12
MPID-T2 - MHC-Peptide Interaction Database-TR version 2 Australia 8unstable0.77
Bioclock - The Aedes aegypti Circadian Database United States 2alive0.49
CAP - Citrus sinensis Annotation Project China 8alive1.98
Sparus aurata transcriptomic database - Sparus aurata transcriptomic database Spain 31unstable5.15
CmMDb - Cucumis melo Microsatellites Database India 0unstable0.00
DIGAP - Database of improved gene annotation for phytopathogens China 5unstable0.52
EnchyBASE - EnchyBASE Portugal 8unstable1.17
GEPdb - Genotype-Expression-Phenotype Database Korea Rep. 1alive0.25
LincSNP China 24alive5.76
ERISdb - ERISdb Poland 7alive1.39
Bolbase - The Brassica oleracea Genome Database China 33unstable6.01
EuroPineDB - SustainPine Database Spain 31alive4.38
MARMAL-AID - A Database for Infinium HumanMethylation450 United Kingdom 16alive3.17
CEG - Cluster of Essential Genes
China 6unstable0.72
MSigDB - Molecular Signatures Database United States 415unstable36.76
CORE United States 76unstable10.31
Rice Annotation Project Database (RAP-DB) Japan 117alive23.40
LOVD - Leiden Open Variation Database France 33dead0.00
SurvExpress Mexico 37unstable5.40
DeOri - Database of Eukaryotic DNA Replication Origins China 12unstable1.60
HapRice Japan 13alive3.22
hmChIP United States 28alive4.00
hPDI - Human Protein-DNA Interactome database United States 41alive5.02
HSC-explorer - hematopoietic stem cell explorer Germany 6unstable1.07
DBBP - DataBase of Binding Pairs in protein-nucleic acid interactions Skip Navigation Links
Korea Rep. -unstable-
dbCPCO - dbCPCO Canada 14alive1.73
DNAVaxDB - DNA vaccine database
United States 9alive2.25
footprintDB - footprintDB
Spain 9alive2.25
IthaGenes - Interactive archive of all sequence variations affecting haemoglobin disorders Cyprus 5alive1.24
Liverome - A database of liver cancer-related gene lists Korea Rep. 19alive2.71
Hoppsigen - Homologous Processed Pseudogenes database France 44unstable0.34
NPRD - Nucleosome Positioning Region Database Russian Federation 20alive1.52
TGI - TIGR Gene Index database United States 214alive16.46
ECgene - ECgene Korea Rep. 167unstable6.29
SpliceInfo Taiwan 37alive2.73
DoOP - Database of Orthologous Promoters Hungary 37unstable1.76
TRACTOR_DB - TRAnscription FaCTORs' predicted binding sites in prokaryotic genomes Cuba 49unstable3.54
TRED - Transcriptional Regulatory Element Database United States 155alive11.57
TPMD - Taiwan Polymorphic Marker Database Taiwan 6unstable0.30
PDBSITE Russian Federation 92alive7.01
United Kingdom 169unstable8.32
PartiGeneDB - A Database of Partial Genomes Canada 12unstable0.83
PBRC - Poxvirus Bioinformatics Resource Center United States 51unstable2.79
EchoBASE - EchoBASE United Kingdom 67unstable2.27
DED - Diatom EST Database Italy 88unstable1.83
AGD - Ashbya Genome Database Switzerland 56unstable3.96
CandidaDB France 77alive5.92
CYGD - Comprehensive Yeast Genome Database Germany 327unstable21.63
PROPHECY - PROfiling of PHEnotypic Characteristics in Yeast Sweden 29alive2.21
MDS_IES_DB - MDS, IES, and pointer annotations for Oxytricha and Tetrahymena United States 34alive2.56
SilkDB China 293unstable7.44
CORG - Comparative Regulatory Genomics Germany 84dead0.00
SilkSatDb India 28alive2.15
ChickVD - Chicken Variation Database China 46alive3.40
DED - Database of Evolutionary Distances United States 6dead0.00
UCSC Proteome Browser - UCSC Proteome Browser United States 51alive3.88
ACLAME - A CLAssification of Mobile genetic Elements Belgium 211alive14.77
GALA - Genome ALignments and Annotations United States 84alive5.60
ISbrowser - Insertion Sequences Browser France 18unstable0.43
ChimerDB Korea Rep. 86unstable4.73
H-DBAS - Human-transcriptome Database for Alternative Splicing Japan 80alive7.27
Spain 34alive4.25
RegPrecise - Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes United States 141unstable13.39
Polymorphix France 23unstable0.18
United States 11unstable0.56
ITS2 Database - Internal Transcribed Spacer 2 Database Germany 366alive30.50
CMR - Comprehensive Microbial Resource United States 577unstable28.17
phiSITE - Database of Gene Regulation in Bacteriophages Slovak Republic 11alive1.38
RatMap - rat genome information Sweden 13unstable0.70
TAED - The Adaptive Evolution Database Norway 155unstable2.64
L1Base Germany 78unstable5.04
DG-CST - Disease Gene Conserved Sequence Tags Database Italy 17alive1.29
HCAD - Human Chromosome Aberration Database Spain 10dead0.00
FESD - Functional Element SNPs Database Korea Rep. 35dead0.00
5'SAGE - 5'-end Serial Analysis of Gene Expression database Japan 17dead0.00
SIEGE - Smoking Induced Epithelial Gene Expression United States 28dead0.00
MetaRouter - Bioinformatics for Bioremediation United Kingdom 38alive2.89
MITOMAP - A database for the human mitochondrial genome United States 325unstable20.25
BB - BarleyBase United States 101unstable0.47
CR-EST - IPK Crop EST Database Germany 40unstable1.94
ViralORFeome - ViralORFeome France 37unstable3.14 - Integrated Database Resource for Marine Ecological Genomics Germany 42unstable3.99
BeetleBase United States 122alive10.98
FlyTF - Transcription factor datamine for Drosophila melanogaster United Kingdom 128unstable8.32
TriTrypDB - Trypanosomatidae Database United States 224alive27.44
MetaBioME - Comprehensive Metagenomic BioMining Engine Japan 36alive4.45
DRYGIN - Data Repository of Yeast Genetic Interactions Canada 71alive8.70
EMMA - European Mouse Mutant Archive United Kingdom 34alive4.25
MouseBook - An Integrated Portal of Mouse Resources United Kingdom 9unstable0.70
MouseIndelDB - Mouse Indel Polymorphism Database United States 13unstable0.86
Patrocles Belgium 114unstable13.11
HLungDB - Human Lung Cancer Database China 48dead0.12
SelTarbase Germany 42alive5.25
GeneFarm - GeneFarm France 22dead0.00
RAD - Rice Annotation Database Japan 15unstable0.45
Brassica ASTRA Australia 43dead0.00
LIS - Legume Information System United States 80unstable4.98
PoMaMo - Potato Maps and More Germany 29dead0.00
VBASE2 - VBASE2 Germany 104alive8.00
HUMHOT - Human Meiotic Recombination Hot Spots India 5dead0.00
SoyBase - USDA-ARS Soybean Genetic Database United States 124unstable6.36
ISfinder - Insertion Sequence finder France 455unstable7.20
ASAP - A Systematic Annotation Package for Community Analysis of Genomes United States 54dead0.00
ABS - database of Annotated regulatory Binding Sites from orthologous promoters Spain 68alive5.67
cisRED - cisRED Canada 112unstable7.19
DBD - Transcription factor prediction database United Kingdom 156unstable12.22
HTPSELEX - Transcription factor binding site sequences obtained with SELEX and high-throughput SELEX method
Switzerland 241unstable5.87
TiProD China 27dead0.00
TRANSFAC - a database on transcription factors and their DNA binding sites Germany 7590unstable231.15
Argonaute Germany 88alive7.26
SRPDB - Signal Recognition Particle Database United States 94unstable5.09
DiProDB - Dinucleotide Property Database
United Kingdom 31unstable3.03
MachiBase - A Drosophila Melanogaster 5'-end mRNA Transcription Database. Japan 25alive2.75
PAZAR - A public database of transcription factor and regulatory sequence annotation Canada 65unstable6.21
PRODORIC - PROcariotIC Database Of Gene-Regulation Germany 52unstable5.20
United States 53unstable3.80
SDR - Specificity-determining Residue Database
United States 16dead0.00
SysZNF - the C2H2 zinc finger gene database Germany 31unstable0.59
AS-ALPS - Alternative Splicing-induced Alteration of Protein Structure Japan 25unstable2.64
ISED - Influenza Sequence and Epitope Database Korea Rep. 11alive1.22
RNA Virus Database United Kingdom 10dead0.00
ARDB - Antibiotic Resistance Genes Database
United States 284alive31.24
ATGC - Alignable Tight Genomic Clusters United States 38alive4.22
OperonDB - A Comprehensive Database of Predicted Operons in Microbial Genomes United States 69alive7.59
Strepto-DB Germany 6unstable0.59
TBDB - Tuberculosis Database United States 154unstable8.73
Aspergillus Genomes United Kingdom 18unstable1.54
GiardiaDB - Giardia Genomics Resource United States 115alive12.52
TrichDB United States 115alive12.52
PlasmoDB - Plasmodium Genomics Resource United States 413alive44.97
TcSNP Argentina 14alive1.49
Genolevures - Genomic Exploration of the Hemiascomycete Yeasts France 223unstable8.28
FLYSNPdb - FLYSNPdb Austria 10alive1.11 - A Tool for Navigating Sequences from Parasitic and Free-living Nematodes United States 165alive11.79
Bionemo - Biodegradation Network Molecular Biology Database
Spain 15alive1.67
CleanEST Korea Rep. 14unstable1.42
EVOG - Evolution Visualizer for Overlapping Genes Korea Rep. 12alive1.33
PhyloPat - Phylogenetic Patterns Netherlands 26alive2.17
Pseudofam - pseudogene families database United States 20alive2.20
SpBase - Strongylocentrotus purpuratus database United States 81alive8.91
HGVbaseG2P - The Human Genome Variation database United Kingdom 63unstable5.32
SNPLogic United States 26unstable0.81
VarySysDB - VarySysDatabase Japan 16alive1.72
MoKCa - Mutations, Oncogenes, Knowledge & Cancer United Kingdom 34alive3.74
AutDB - Autism Spectrum Disorders database United States 121unstable11.97
DNAReplication - DNAReplication United Kingdom 10alive1.09
ERGR - ethanol-related gene resource United States 32dead0.00
G2Cdb - Genes to Cognition database United Kingdom 41alive4.46
MDPD - Mutation Database for Parkinson's Disease Singapore 15unstable0.73
RAPID - Resource of Asian Primary Immunodeficiency Diseases India 33unstable3.45
BloodExpress United Kingdom 33alive3.59
SysPIMP China 16unstable0.11
OligoArrayDb - Pangenomic Oligonucleotide Microarray Probe Sets Database United States 8unstable0.68
GOBASE - Organelle Genome Database
Canada 54alive5.94
AutoSNPdb Australia 69alive7.59
GabiPD - GABI Primary Database Germany 36alive3.88
ATTED-II Japan 711alive64.64
OryGenesDB - An Interactive Tool for Rice Reverse Genetics France 28alive3.11
RiceGeneThresher Thailand 10alive1.08
YH - YanHuang China 30unstable3.13
GISSD - Group I Intron Sequence and Structure Database China 54unstable3.29
TranspoGene - TranspoGene Israel 56alive5.54
UgMicroSatdb - Database for mining microsatellites from Unigenes India 13unstable1.18 - United States 13alive1.25
ProSAS - Protein Structure and Alternative Splicing database Germany 24unstable0.74
CMGSDB - Database for Computational Modeling of Gene Silencing United States 6dead0.00
DBTBS - Database of Transcriptional Regulation in Bacillus subtilis Japan 495alive29.12
ORegAnno - Open Regulatory Annotation
United States 163unstable11.41
ProTISA China 25dead0.00
TransfactomeDB - Yeast Transfactome Database United States 22alive2.18
RAPESEED - The Shanghai RAPESEED Database China 21unstable0.65
Panzea - Panzea United States 84unstable3.22
TAIR - The Arabidopsis Information Resource United States 768unstable39.94
PlantGDB United States 148alive14.50
Mitome - A Database for Comparative Mitochondrial Genomics in Metazoan Animals
Korea Rep. 34alive3.40
PharmGKB - The Pharmacogenomics Knowledgebase United States 67unstable1.27
PubMeth Belgium 127alive12.57
MethyCancer - The Database of Human DNA Methylation and Cancer China 75alive7.43
CanGEM - Cancer GEnome Mine Finland 35unstable2.24
F-SNP - The Functional Single Nucleotide Polymorphism database Canada 242unstable18.63
MSY Breakpoint Mapper - A Database of Sequence-tagged Sites in Defining Naturally Occurring Deletions in the Human Y Chromosome United States 19alive1.88
Evola - Database of Evolutionary Features of Human Genes Japan 35alive3.50
UTGB - University of Tokyo Genome Browser Medaka Japan 26alive2.60
ButterflyBase - United Kingdom 78dead0.00
PBmice - PB Mutagenesis Information CEnter China 34dead0.00
Gallus GBrowse - A Unified Genomic Database for the Chicken United States 14unstable0.22
BMRB - Biological Magnetic Resonance Data Bank
United States 635alive63.50
IDBD - Infectious Disease Biomarker Database Korea Rep. 18unstable1.30
BioHealthBase United States 70unstable5.04
CoVDB - CoVDB Hong Kong SAR China 29unstable1.30
GenoList - An Integrated Environment for the Analysis of Microbial Genomes France 50unstable4.35
HEG-DB - The highly expressed genes database Spain 271alive23.90
ToxoDB - Toxoplasma gondii database United States 381alive24.89
ProtozoaDB Brazil 23dead0.02
OPTIC - Orthologous and Paralogous Transcripts in Clades United Kingdom 32alive3.07
Greglist - Database of G-quadruplex Regulated Genes China 43unstable2.71
QuadBase - QuadBase India 71unstable6.46
SuperCAT - SuperCAT Norway 37alive3.63
InSatDb - Insect Microsatellite Database India 37alive3.36
PReMod - Predicted Regulatory Modules Canada 94alive8.37
U12DB - U12DB Spain 83alive7.47
Pseudogene United States 115unstable1.99
RetrOryza - RetrOryza
France 42dead0.04
SNPSTR - microsatellite marker and tightly linked SNPs United Kingdom 31alive2.73
SGDB - Synthetic Gene Database
United States 26unstable1.09
TRDB - The Tandem Repeats Database
United States 113alive9.86
VEB - VISTA Enhancer Browser United States 340unstable10.20
GenomeTrafac - GenomeTrafac United States 25alive2.27
qPrimerDepot - qPrimerDepot
United States 105unstable4.87
PathoPlant - PathoPlant Germany 33alive2.97
PlantTA - TIGR Plant Transcript Assemblies (TA) database United States 169unstable12.75
POGs/PlantRBP - POGs/PlantRBP United States 31dead0.00
PlantQTL-GE - A database system for identifying candidate genes in rice and Arabidopsis by gene expression and QTL information China 21dead0.00
ForestTreeDB - ForestTreeDB Canada 29unstable1.48
MaizeGDB - Maize Genetics and Genomics Database United States 54alive4.86
TomatEST - Tomato expressed sequence tag Italy 26unstable2.13
D-HaploDB - The Definitive Haplotype Database Japan 9unstable0.24
PolyDoms United States 58alive5.17
Snap - Single Nucleotide Polymorphism Annotation Platform Denmark 32alive2.79
CancerGenes - CancerGenes United States 151alive13.59
PharmGED - Pharmacogenetic Effect Database Singapore 8dead0.00
GAN - Gene Aging Nexus United States 38unstable1.04
EPConDB - EPConDB United States 15alive1.36
Singapore 14dead0.00
OncoDB.HCC - Oncogenomic Database of Hepatocellular Carcinoma Taiwan 61alive5.49
HSPD - Hedgehog Signaling Pathway Database United States 3dead0.00
AnimalQTLdb - Animal Quantitative Trait Loci (QTL) database United States 338unstable17.82
MamPol - Mammalia Polymorphism Database Spain 7alive0.64
PigGIS - Pig Genomic Informatics System China 9unstable0.73
PEDE - Pig Expression Data Explorer Japan 52unstable4.11
PlasmID - Plasmid Information Database United States 27alive2.41
WormBook - the online review of Caenorhabditis elegans biology United States 51alive4.64
Russian Federation 15alive1.36
DroSpeGe - Drosophila Species Genomes United States 50unstable4.09
GIB-V - Genome Information Broker for Viruses Japan 11unstable0.14
TBestDB - Taxonomically Broad EST Database Canada 84alive7.56
NMPDR - National Microbial Pathogen Data Resource United States 90unstable7.45
VNTRDB - Variable Number Tandem Repeat Database Taiwan 34dead0.00
HepSEQ - HepSEQ United Kingdom 19alive1.73
HPSMD - HIV Positive Selection Mutation Database United States 21dead0.00
IVDB - Influenza Virus Database China 49alive4.28
xBASE United Kingdom 124dead0.00
ICDS database - Interrupted CoDing Sequence database France 23dead0.00
OrthoMCL-DB - Querying a Comprehensive Multi-species Collection of Ortholog Groups United States 516unstable30.53
PUMA2 - PUMA2 United States 72dead0.00
SIDDBASE United States 14dead0.00
VMD - VBI Microbial Database United States 26dead0.00
DPVweb - Descriptions of Plant Viruses United Kingdom 35alive2.92
ShiBASE China 22alive1.82
LEGER - Post-genome Database for Listeria Research Germany 24unstable0.96
CryptoDB United States 87alive7.11
Germany 71unstable4.21
TcruziDB - TcruziDB Argentina 27unstable1.78
Genome Snapshot - An Overview Of The Saccharomyces Cerevisiae Genome. United States 85dead0.00
YGOB - Yeast Gene Order Browser Ireland 54alive4.50
PFGD - Phytophthora Functional Genomics Database United States 21alive1.68
StellaBase - Nematostella vectensis Genomics Database United States 130unstable3.25
DBTGR - DBTGR Japan 20alive1.67
QTL MatchMaker United States 5unstable0.34
CTGA - Catalogue of Transmission Genetics in Arabs United Arab Emirates 42alive3.50
HPtaa database China 18unstable0.50
Japan 26dead0.00
IGTC - International Gene Trap Consortium United States 120unstable7.10
AOBase - database for antisense oligonucleotides selection and design
China 6dead0.00
ChloroplastDB - Chloroplast Genome Database United States 68unstable5.16
HvrBase++ Germany 11unstable0.79
Phytome United States 38alive3.17
Plant MPSS databases - signature-based transcriptional resources for analyses of mRNA and small RNA United States 231unstable12.13
RMD - Rice Mutant Database China 129unstable6.99
SoyGD - Soybean Genome Database United States 70dead0.00
TED - Tomato Expression Database United States 68alive5.55
EPGD - Eukaryotic Paralog Group Database China 16unstable0.27
GenBank - GenBank United States 46415unstable492.28
dbSNP - Single Nucleotide Polymorphism Database United States 3381unstable62.28
MG-RAST - Metagenomics RAST
United States 1alive0.50
RBP-Var China 0alive0.00
MERAV - Metabolic gEne RApid Visualizer United States 0alive0.00
SIB - Swiss Institute of Bioinformatics
Switzerland 6unstable0.96
BIGNASim - BIGNASim database structure and analysis portal for nucleic acids simulation data
Spain 1alive0.50
Lynx United States 0alive0.00
MutationAligner - A Resource of Recurrent Mutation Hotspots in Protein Domains in Cancer United States 0unstable0.00
IC4R - Information Commons for Rice China 1alive0.50
SBR-Blood - Systems Biology Repository United States 0unstable0.00
MitoAge - A database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity Israel 1alive0.50
SORFS.ORG Belgium 2alive0.98
EBI - The European Bioinformatics Institute United Kingdom 610unstable16.27
BreCAN-DB India 0alive0.00
HGTree - Database of Horizontally Transferred Genes Determined by Tree Reconciliation Pakistan 1alive0.49
PCOSKB - KnowledgeBase on Polycystic Ovary Syndrome India 1alive0.49
BacWGSTdb - Bacterial Whole Genome Sequence Typing database China 1unstable0.47
InsectBase China 1unstable0.46
GREENC - Green Non-Coding Database Spain 0unstable0.00
SEA - Super-Enhancer Archive China 1alive0.50
PlanMine Germany 1alive0.50
Assembly United States 4unstable0.66
GEneSTATION United States 1alive0.48
DDBJ - DNA Data Bank of Japan
Japan 1085unstable34.36
NCBI - National Center for Biotechnology Information United States 16174unstable305.51
BRAD - Brassica database China 155alive22.14
ChloroMitoSSRDB - Webserver cum Database of Cholorplast and Mitochondrial Microsatellites
Italy 0alive0.00
SBMDb - Sugar Beet Microsatellite Database India 0unstable0.00
MtiBase - MiRNA-target interactions database
China 0unstable0.00
JRC GMO-Amplicons
Italy 0alive0.00
MGDB_2 - Melanoma Gene Database China 0unstable0.00
DENdb - Dragon ENhancers database Saudi Arabia 1unstable0.27
FlyVar - fly variation database China 1unstable0.27
EpiFactors - EpiFactors Russian Federation 3alive0.99
CEGA - Conserved Elements from Genomic Alignments Switzerland 1unstable0.41
FARE-CAFE - Database of Functional and Regulatory Elements of Cancer-Associated Fusion Events Taiwan 1unstable0.21
Pre_GI - Predicted Genomic Islands database South Africa 0unstable0.00
dbHiMo - database for histone-modifying enzymes
Korea Rep. 0alive0.00
Ebola-KB - Ebola virus-centered Knowledge Base United States 0unstable0.00
mycoCLAP - Characterized Lignocellulose-Active Proteins of Fungal Origin Canada 0unstable0.00
KIR - Kiwifruit Information Resource China 0unstable0.00
SymbioGenomesDB - Symbiotic Genomes Database for the integration and access to knowledge on host-symbiont relationships
Spain 0alive0.00
MouseNet - Probabilistic Functional Gene Network for Laboratory Mouse,Mus Musculus Korea Rep. 0unstable0.00
WaspAtlas - Nasonia vitripennis gene database United Kingdom 0unstable0.00
JuncDB Israel 1alive0.50
CicArVarDB - Chickpea SNP-InDel Database India 0unstable0.00
OCDB - Obsessive-Compulsive Disorder Database Italy 1unstable0.14
dbSUPER - a database of super-enhancers in mouse and human genome China 2unstable0.93
rVarBase China 28alive6.79
CauloBrowser United States 0alive0.00
PhytoPath United Kingdom 1alive0.50
DIDA - DIgenic diseases DAtabase Belgium 1alive0.50
FLOR-ID - Flowering Interactive Database Belgium 4alive2.00
PlantPAN - Plant Promoter Analysis Navigator Taiwan 188alive18.80
CAMPR3 - Collection of Anti-Microbial Peptides India 1alive0.49
ANISEED France 2unstable0.45
PGSB PlantsDB - Plant Genome and Systems Biology PlantsDB Germany 1alive0.50
PlantDHS - A plant DNase I hypersensitive site database United States 3alive1.44
ENA - European Nucleotide Archive United Kingdom 2398unstable71.94
INDIGO - An INtegrated Data warehouse of mIcrobial GenOmes Saudi Arabia 13unstable2.44
DMAP - Dragon Metagenomic Analysis Platform Saudi Arabia -unstable-
GSA - Genome Sequence Archive China 4alive3.84
SorGSD - a sorghum genome SNP database China 0alive0.00
HRGD - Heterosis Related gene Database China 6unstable0.63
KGCAK - A K-mer based database for genome-wide phylogeny and complexity evaluation China 0unstable0.00
OGDD - Olive Genetic Diversity Database Tunisia 1alive0.50
HGMD - The Human Gene Mutation Database United Kingdom 2655unstable98.61
BIG Data Center - BIG Data Center for Life & Health Sciences China 12alive12.00
GTRD - Gene Transcription Regulation Database Russian Federation 0alive0.00
R-loopDB Singapore 0alive0.00
TFBSbank United Kingdom 0unstable0.00
CGDB - Circadian Gene DataBase China 0alive0.00
IMG/VR - Integrated Microbial Genomes / Virus United States 0dead0.00
IRD - Influenza Research Database United States 165dead0.00
pVOGs - Prokaryotic Virus Orthologous Groups United States 1alive0.99
proGenomes United Kingdom 0alive0.00
antiSMASH-DB - antibiotics & Secondary Metabolite Analysis SHell database Denmark 2unstable0.76
PathoYeastract - Pathogenic Yeast Search for Transcriptional Regulators And Consensus Tracking Portugal 900alive75.00
CeNDR - Caenorhabditis elegans Natural Diversity Resource United States 2dead0.00
Cistrome DB - Cistrome Data Browser China 0alive0.00
HieranoiDB Sweden 0alive0.00
The Monarch Initiative United States 2unstable0.18
mirDNMR China 1unstable0.87
denovo-db United States 0alive0.00
ExAC Browser - Exome Aggregation Consortium Browser
United States 2alive2.00
IGSR - The International Genome Sample Resource United Kingdom 1alive1.00
IPD-MHC United Kingdom 0unstable0.00
GWAS Catalog United Kingdom 3886unstable401.55
EURISCO - European Search Catalogue for Plant Genetic Resources Germany 0alive0.00
PMDBase China 0alive0.00
dbWGFP China 1unstable0.44
ANItools China 6alive1.50
SinEx DB - SinEx DATABASE Chile 0alive0.00
PvTFDB - Phaseolus vulgaris Transcription Factor Database India 0unstable0.00
MODEM - Multi-Omics Data Envelopment and Mining in maize China 0unstable0.00
Skeleton Genetics
China 0unstable0.00
SlideBase Denmark 0alive0.00
viruSITE - integrated database for viral genomics Slovak Republic 0alive0.00
MGFD - Maize Gene Families Database China 0dead0.00
Fish Karyome India 4alive0.66
Cryptosporidium hominis Gene Catalog United States 0alive0.00
dbPEC - Database for Preeclampsia
United States 1alive0.50
DemaDb Malaysia 2alive1.00
R-Syst France 4unstable0.90
Australia 0dead0.00
RSIADB - Rice Sheath Blight Pathogen Genomics Database China 1alive0.50
BRONCO - Biomedical entity Relation ONcology COrpus Korea Rep. 7alive3.36
3CDB - Chromosome Conformation Capture Database China 1unstable0.40
PGP - Plant Genomics and Phenomics Research Data Repository Germany 4alive2.00
Chinchilla Research Resource Database United States 2unstable0.54
DPTEdb - Dioecious Plants Transposable Elements Database China 2alive0.98
gEVE - Genome-based Endogenous Viral Element Database Japan 0alive0.00
Tfcheckpoint - Transcription Factor Checkpoint Norway 8alive1.60
SorghumFDB China 0unstable0.00
SSTAR - Semantic catalog of Samples, Transcription initiation And Regulators Japan 5unstable2.35
Ricebase United States 2dead0.00
PGD - Pangolin Genome Database Malaysia 0unstable0.00
Reefgenomics Saudi Arabia 4alive2.00
iMITEdb - insects miniature inverted-repeat transposable elements database China 0unstable0.00
BMW - Boechera Microsatellite Website United States 2alive1.92
HIVoligoDB - The HIV oligonucleotide database Portugal 0alive0.00
GrTEdb - Gossypium raimondii transposable elements database China 0unstable0.00
OCaPPI-Db - Oligonucleotide Capture Probes for Pathogen Identification Database France 0unstable0.00
SilkPathDB - Silkworm Pathogen Database China 0unstable0.00
Hungary 12alive2.00
WikiGenomes United States 0alive0.00
ChromothripsisDB - a curated database of chromothripsis
China 2alive0.98
BISQUE - Biological Sequence Exchange United States 1alive0.50
dbDSM - database of Deleterious Synonymous Mutation China 1unstable0.44
PhenoScanner United Kingdom 6alive3.00
Pro54DB - σ54 promoter database China 0unstable0.00
ncbi viral genome database - ncbi viral genome database United States 0dead0.00
NCBI Influenza Virus Resource - NCBI Influenza Virus Resource United States 842dead0.00
GVM - Genome Variation Map China 0alive0.00
VISTA Enhancer Browser - VISTA Enhancer Browser whole genome enhancer browser United States 0dead0.00
* Citations derived from Google Scholar.