Database Commons a catalog of biological databases

Database Commons - Browse
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Database name Data type(s) Major organism(s) Location Citation* Status z-index
RNAcentral United Kingdom 31alive9.92
P2CS - Prokaryotic 2-Component Systems France 80alive8.80
GenoBase - Escherichia coli K-12 Resource Database Japan 5unstable0.53
Open TG-GATEs - Toxicogenomics Project-Genomics Assisted Toxicity Evaluation System Japan 17dead0.00
ArrayExpress
United Kingdom 289unstable39.30
BioSamples
United Kingdom 39unstable4.42
UniCarbKB - UniCarb KnowledgeBase Australia 85alive11.90
BacDive - Bacterial Diversity Metadatabase Germany 8alive2.00
EBI Metagenomics - EBI Metagenomics
United Kingdom 32unstable5.20
GGBN - Global Genome Biodiversity Network Germany 28alive6.93
BioGPS
United States 99alive19.80
HAGR - Human Ageing Genomic Resources United Kingdom 595alive45.77
DDBJ BioProject - The DNA Data Bank of Japan BioProject
Japan 35unstable4.72
GOLD - Genomes On Line Database United States 1646unstable27.43
MIRIAM Registry - MIRIAM Registry
United Kingdom 97unstable10.99
ProPortal - Prochlorococcus Portal United States 18unstable2.76
RecountDB - A Database of Mapped and Count Corrected Transcribed Sequences
Japan 1dead0.00
MetaBase - Meta Database
Korea Rep. 21alive3.50
SEQanswers wiki
China 21alive3.43
CAMERA United States 257unstable31.94
CiF - Cyber-infrastructure for Fusarium United States 40unstable5.26
RIKEN Japan 28unstable0.64
Bookshelf
United Kingdom 5alive0.62
BioMart
Canada 49alive6.79
CreZOO - CreZOO Greece 4unstable0.25
GrameneMart - BioMart data portal for the Gramene project United States 16alive2.67
YeastMine - YeastMine United States 54unstable8.01
wwpdb - worldwide protein data bank archive
United States 8alive1.58
CanvasDB
Sweden 4unstable0.82
CGHub - Cancer Genomics Hub United States 26unstable1.37
NONATObase - A Database for Polychaeta (Annelida) from the Southwestern Atlantic Ocean Brazil 3unstable0.69
MetaMetaDB - Meta- Metagenomic Data Base Japan 3alive0.75
GCM - Global Catalogue of Microorganisms China 7alive1.40
YRC PDR - Yeast Resource Center Public Data Repository United States 34alive2.62
NCBI BioSystems database - NCBI BioSystems database
United States 261unstable11.75
BioNumbers
Israel 177alive22.13
GeMInA - Genomic Metadata for Infectious Agents United States 15unstable1.44
BIOZON
United States 53unstable4.02
ExplorEnz - The Enzyme Database
Ireland 54alive6.00
Deja vu - Deja vu
United States 56dead0.00
CLDB - Cell Line Data Base Italy 61alive6.78
PODB3 - The plant organelles database 3 Japan 43unstable4.00
CEBS - Chemical Effects in Biological Systems United States 106unstable7.00
ApiDB - Apicomplexan Bioinformatics Resource Center United States 101unstable7.44
OMICtools - An Informative Directory for Multi-omic Data Analysis
France 15unstable2.25
INSDC - International Nucleotide Sequence Database Collaboration United Kingdom 157alive22.43
MG-RAST - Metagenomics RAST
United States 1alive0.50
HPMCD - Human Pan-Microbe Communities Database United Kingdom 1alive0.50
EMDataBank - Unified Data Resource for 3-Dimensional Electron Microscopy
United States 1alive0.50
NCBI - National Center for Biotechnology Information United States 16174unstable323.48
Tools and data services registry
Denmark 1alive0.50
DESM - Microbial Knowledge Exploration Systems Saudi Arabia 1unstable0.46
NNTC - National NeuroAIDS Tissue Consortium United States 0unstable0.00
toxoMine - data warehouse for Toxoplasma gondii United States 0alive0.00
MiDAS - Microbial Database for Activated Sludge Denmark 32alive10.67
eHistology - eHistology United Kingdom 3alive0.98
NeuroTransDB - Highly Curated and Structured Transcriptomic Metadata for Neurodegenerative Diseases Germany 1unstable0.06
CrisprGE
India 0unstable0.00
BioAcoustica
United Kingdom 0alive0.00
GBIS - Genebank Information System Germany 0unstable0.00
BaMBa - Brazilian Marine Biodiversity Database
Brazil 0unstable0.00
Metabolomics Workbench United States 0alive0.00
ENA - European Nucleotide Archive United Kingdom 2398unstable76.51
GSA - Genome Sequence Archive China 4unstable3.80
Database Commons - a catalog of biological databases
China -alive-
BIG Data Center - BIG Data Center for Life & Health Sciences China 12alive12.00
WDCM - World Data Centre for Microorganisms China 0alive0.00
HipSci - Human Induced Pluripotent Stem Cells Initiative United Kingdom 0alive0.00
Bio-TDS - Bioscience Query Tool Discovery Systems
United States 0alive0.00
myPhyloDB United States 0unstable0.00
ScaleNet United States 61alive30.50
MDM-Portal - Medical Data Models Germany 7dead0.00
EXTRACT
Denmark 10dead0.00
Wikidata United States 4dead0.00
HIVE - High-performance integrated virtual environment
United States 12dead0.03
PGP - Plant Genomics and Phenomics Research Data Repository Germany 4alive2.00
Harmonizome United States 5unstable2.25
BioC Viewer
Korea Rep. 3alive1.50
Markyt
Spain 1alive0.49
SeriPort India 0alive0.00
EMAP - e-Mouse Atlas Project United Kingdom 65alive2.47
AnnoSys
Germany 0unstable0.00
SSBD - Systems Science of Biological Dynamics database Japan 7alive2.33
ICG - A knowledgebase of Internal Control Genes for RT-qPCR normalization China 0alive0.00
* Citations derived from Google Scholar.
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