Database Commons a catalog of biological databases

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Database name Data type(s) Major organism(s) Location Citation* Status z-index
MethBank - Methylation Bank China 6alive2.00
MeT-DB - The MethylTranscriptome DataBase China 3unstable0.95
BioGRID - Biological General Repository for Interaction Datasets
Canada 4359unstable261.54
dbSNO - Database for Cysteine S-Nitrosylation Taiwan 52alive8.49
PhosphoSitePlus United States 653alive108.83
MethHC - A database of DNA Methylation and gene expression in Human Cancer Taiwan 18alive5.94
DDMGD - database of diseases associated gene methylation in different species Saudi Arabia 2unstable0.48
NGSmethDB - High-quality Methylation Maps Spain 52unstable5.35
CR Cistrome - Chromatin Regulator Cistrome China 6unstable1.28
MODOMICS - A Database of RNA Modifications Poland 509alive41.99
dbPTM - Database of Protein Post-Translational Modifications
Taiwan 205alive16.91
PhosPhAt - The Arabidopsis Protein Phosphorylation Site Database Germany 416alive41.60
Histome - The Histone Infobase India 49unstable7.76
MethylomeDB - database containing genome-wide brain DNA methylation profiles United States 33unstable1.71
RNAMDB - RNA Modification Database United States 1297unstable37.83
PHOSIDA - phosphorylation site database Germany 567unstable44.84
Phospho.ELM - A database of experimentally verified phosphorylation sites in eukaryotic proteins Germany 580unstable6.63
CPLM - Compendium of Protein Lysine Modifications
China 27unstable0.73
PhosphoGRID Canada 63unstable2.60
CELLPEDIA Japan 10alive1.43
Reactome BioMart - Reactome BioMart United Kingdom 8dead0.00
BGDB - Bivalent Genes Database China 4unstable0.04
dbPPT - Database of Protein Phosphorylation in Plants China 5alive1.25
EpimiR - Database of Curated Mutual Regulation Between epigenetic Modifications and miRNAs China 8unstable1.48
aglgenes - aglgenes Israel 0alive0.00
dbPSP - Database for Protein Phosphorylation Sites in Prokaryotes China 0alive0.00
novPTMenzy - A Database for Enzymes Involved in Novel Post-translational Modifications.
India 1unstable0.31
PEpiD - Prostate Epigenetic Database China 5unstable0.81
SyStemCell China 6unstable0.61
mUbiSiDa - Database of mammalian protein ubiquitination site China 14unstable3.05
MARMAL-AID - A Database for Infinium HumanMethylation450 United Kingdom 16alive3.17
HHMD - Human Histone Modification Database China 42unstable4.72
EROP - Endogenous Regulatory OligoPeptide knowledgebase
Russian Federation 41alive3.42
APD - Antimicrobial Peptide Database United States 572alive62.92
PubMeth Belgium 127alive12.57
MethyCancer - The Database of Human DNA Methylation and Cancer China 75alive7.43
WormBook - the online review of Caenorhabditis elegans biology United States 51alive4.64
SBR-Blood - Systems Biology Repository United States 0unstable0.00
CPPsite - Database of Cell-Penetrating Peptides
India 70alive11.67
SEA - Super-Enhancer Archive China 1alive0.50
EpiFactors - EpiFactors Russian Federation 3alive0.99
SATPdb - A database of structurally annotated therapeutic peptides
India 1alive0.50
dbHiMo - database for histone-modifying enzymes
Korea Rep. 0alive0.00
ccmGDB - Cancer Cell Metabolism Gene DataBase United States 2unstable0.17
Colorectal Cancer Atlas Australia 1alive0.50
RMBase - RNA Modification Base China 2unstable0.63
SIGNOR - SIGnaling Network Open Resource Italy 2unstable0.80
PlantDHS - A plant DNase I hypersensitive site database United States 3unstable1.42
GSA - Genome Sequence Archive China 4unstable3.80
BIG Data Center - BIG Data Center for Life & Health Sciences China 12alive12.00
MethSMRT China 0unstable0.00
ADPriboDB - The Database of ADP-ribosylated proteins United States 0alive0.00
WERAM - Writers, Erasers and Readers of Acetylation & Methylation China 1alive1.00
ccNET China 0unstable0.00
* Citations derived from Google Scholar.
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