Database Commons a catalog of biological databases

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Database name Data type(s) Major organism(s) Location Citation* Status z-index
SUPERFAMILY - SUPERFAMILY United Kingdom 976alive56.84
COG - Clusters of Orthologous Genes United States 11125unstable227.80
IPD - Immuno Polymorphism Database United Kingdom 323unstable19.88
EzCatDB - Database of Enzyme Catalytic Mechanisms
Japan 60unstable3.74
Cfam - Chemical Families Database
Singapore 0dead0.00
ViRBase - virus-host ncRna interaction database China 0alive0.00
FlyBase - Database of Drosophila Genes & Genomes United States 3836alive159.83
RGD - Rat Genome Database United States 60unstable18.80
neXtProt - Exploring the universe of human proteins Switzerland 237unstable11.45
GRASP - Genome-Wide Repository of Associations between SNPs and Phenotypes United States 28unstable3.15
The UCSC Cancer Genomics Browser United States 187unstable4.99
ADReCS - Adverse Drug Reaction Classification System China 3unstable0.92
GO - Gene Ontology Consortium Switzerland 5117alive301.00
GOA database - Gene Ontology Annotation (UniProt-GOA) Database
United Kingdom 229unstable30.53
DO - Disease Ontology United States 248alive40.92
miRBase - microRNA dababase United Kingdom 11326alive792.82
KEGG - Kyoto Encyclopedia of Genes and Genomes Japan 25114alive1321.79
eggNOG - Database of Orthologous Groups and Functional Annotation
Germany 107alive26.48
TCDB - Transporter Classification Database United States 87alive21.53
MetaCyc database - A database describing metabolic pathways and enzymes from all domains of life.
United States 199unstable22.39
LPSN - List of Prokaryotic names with standing in nomenclature United States 129alive32.25
CGD - Candida Genome Database United States 167alive27.56
VIOLIN - Vaccine investigation and online information network United States 20alive5.00
GoMapMan - GoMapMan Slovenia 16alive4.00
GDR - Genome Database for Rosaceae United States 343unstable22.54
The Genome Properties database - The Genome Properties database United States 65unstable12.09
ChEBI - Chemical Entities of Biological Interest
United Kingdom 187alive37.40
SIFTS - Structure Integration with Function, Taxonomy and Sequence
United Kingdom 50alive10.00
dcGO - Database of Domain-centric Ontologies
United Kingdom 30alive6.00
Genenames.org - HGNC Genenames.org United Kingdom 785unstable62.80
SpermatogenesisOnline - Annotation of Genes/Proteins Involved in Spermatogenesis China 7dead0.00
IMGT/HLA United Kingdom 370unstable59.20
CharProtDB - Characterized Protein Database
United States 21unstable3.08
CAPS-DB
United Kingdom 7alive1.17
Identifiers.org
United Kingdom 97alive16.17
MIRIAM Registry - MIRIAM Registry
United Kingdom 97unstable12.93
GeneWeaver - GeneWeaver United States 54alive9.00
LegumeIP - An Integrative Platform to Study Gene Function and Genome Evolution in Legumes United States 27alive4.32
GONUTS - Gene Ontology Normal Usage Tracking System United States 13unstable1.21
AgBase United States 301alive25.08
BTO - BRENDA Tissue Ontology Germany 49alive6.93
PRO - Protein Ontology United States 163alive22.35
GOOD - Gene-Oriented Ortholog Database Taiwan 3unstable0.31
Allie - A Search Service for Abbreviation / Long Form
Japan 13alive1.86
The Units Ontology
United Kingdom 16dead0.00
CARLSBAD United States 5alive0.98
GoSynthetic - Synthetic Biology Workbench Germany 2alive0.40
AromaDeg - Aromatic Hydrocarbon Degradation Database
Germany 8alive2.00
CGHub - Cancer Genomics Hub United States 26unstable1.56
GOCat4FT - Gene Ontology Categorizer
Switzerland 2unstable0.41
CEG - Cluster of Essential Genes
China 6unstable0.90
SDOP-DB - A comparative standardised-protocol database Japan 3alive0.38
SilkDB China 293unstable9.24
ACLAME - A CLAssification of Mobile genetic Elements Belgium 211alive14.77
FunSimMat - Functional Similarity Matrix
Germany 87alive8.61
PNU - Protein Naming Utility United States 6unstable0.67
CR-EST - IPK Crop EST Database Germany 40unstable2.43
LOCATE - subcellular localization database Australia 87alive7.25
miROrtho - The catalogue of animal microRNA genes Switzerland 55alive6.11
OKCAM - Ontology for Cell Adhesion Molecules United States 10unstable1.04
ExplorEnz - The Enzyme Database
Ireland 54alive6.00
CLDB - Cell Line Data Base Italy 61alive6.78
TAIR - The Arabidopsis Information Resource United States 768unstable49.92
PO - the Plant Ontology Database United States 125alive12.25
Genome Snapshot - An Overview Of The Saccharomyces Cerevisiae Genome. United States 85dead0.00
INSDC - International Nucleotide Sequence Database Collaboration United Kingdom 157alive22.43
MG-RAST - Metagenomics RAST
United States 1alive0.50
COMBREX-DB - COMBREX database United States 0alive0.00
IC4R - Information Commons for Rice China 1alive0.50
EBI - The European Bioinformatics Institute United Kingdom 610unstable20.33
WeGET - Weighted Gene Expression Tool and database Netherlands 0alive0.00
HPMCD - Human Pan-Microbe Communities Database United Kingdom 1alive0.50
GEneSTATION United States 1alive0.49
NCBI - National Center for Biotechnology Information United States 16174unstable377.39
DESM - Microbial Knowledge Exploration Systems Saudi Arabia 1unstable0.46
mycoCLAP - Characterized Lignocellulose-Active Proteins of Fungal Origin Canada 0unstable0.00
CSDB - Carbohydrate Structure Database
Russian Federation 0alive0.00
sRNATarBase - sRNATarBase China 32unstable2.88
Digital Development - Digital Development United States 0alive0.00
Colorectal Cancer Atlas Australia 1alive0.50
ANISEED France 2unstable0.57
CSDBs - Carbohydrate Structure Databases Russian Federation 2alive1.00
BIG Data Center - BIG Data Center for Life & Health Sciences China 12alive12.00
GOC - Gene Ontology Consortium
United States 2alive2.00
Ontobee
United States 0alive0.00
VGNC - Vertebrate Gene Nomenclature Committee United Kingdom 0unstable0.00
PX - ProteomeXchange
United Kingdom 1059unstable243.57
ICEPO - Ion Channel ElectroPhysiology Ontology
Switzerland 2dead0.00
BioSharing
United Kingdom 10dead0.00
AmiGO
Switzerland 775alive86.11
EMAP - e-Mouse Atlas Project United Kingdom 65alive2.50
CCO - Cell Component Ontology
United States 223alive16.81
ConceptMetab
United States 3alive1.50
ProbOnto
United Kingdom 2unstable0.12
* Citations derived from Google Scholar.
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