Database Commons a catalog of biological databases

Database Commons - Browse
Data type:

Database name Data type(s) Major organism(s) Location Citation* Status z-index
TopFIND - Termini oriented protein Function Inferred Database Canada 98alive14.00
RCSB PDB - RCSB Protein Data Bank United States 853unstable69.46
Genome3D - Annotating Genomes with Structures United Kingdom 42alive5.04
CeCaFDB - Central Carbon Metabolic Flux Database China 0unstable0.00
GenoBase - Escherichia coli K-12 Resource Database Japan 5unstable0.52
GO - Gene Ontology Consortium Switzerland 5117alive301.00
NPInter - ncRNA Interaction Database China 119unstable7.64
KEGG - Kyoto Encyclopedia of Genes and Genomes Japan 25114alive1321.79
COLOMBOS Belgium 35alive5.00
PortEco - potral for E. coli research United States 13alive3.15
RNApathwaysDB - RNA Pathways Database Poland 5alive0.99
EcoCyc - BioCyc Database Collection United States 3517unstable57.55
EcoGene - The EcoGene Database of Escherichia coli Sequence and Function United States 312unstable13.00
ECMDB - Escherichia coli Metabolome Database Canada 32alive6.40
MetaboLights - A Repository for Metabolomics Studies and Associated Meta-data United Kingdom 161unstable17.17
the DARC site - The Database for Aligned Ribosomal Complexes site Germany 4unstable0.61
IntAct United Kingdom 499unstable54.06
DNAtraffic - DNAtraffic Poland 3unstable0.34
EcoliWiki - EcoliWiki United States 24unstable3.08
OrthoDisease - Tracking Disease Gene Orthologs Across 100 Species Sweden 74alive5.29
PHOSIDA - phosphorylation site database Germany 567unstable42.78
HitPredict Japan 57alive8.14
KUPS - University of Kansas Proteomics Service United States 21unstable0.33
REPAIRtoire - A Database of DNA Repair Pathways Poland 24alive3.39
IFIM - Integrated Fitness Information for Microbial genes China 4unstable0.66
RegulonDB - Regulon DataBase Mexico 2506alive124.05
WholeCellSimDB United States 4unstable0.93
EcoliNet - Database of Cofunctional Gene Network for Escherichia coli Korea Rep. 0unstable0.00
PaGenBase - Pattern Gene Database China 8unstable1.46
KEGGtranslator - KEGGtranslator Germany 69unstable9.36
Small Subunit rRNA Modification Database United States 62dead0.00
EchoBASE - EchoBASE United Kingdom 67unstable2.27
Transterm New Zealand 108alive6.55
SWISS-MODEL - The SWISS-MODEL Repository Switzerland 7583unstable124.58
EcID - Escherichia coli Interaction Database Spain 26alive2.89
M3D - Many Microbe Microarrays Database United States 195alive19.50 - Canada 46unstable1.98
iGNM - Gaussian Network Model Database United States 116alive8.92
Start2Fold Belgium 1alive0.50
BEAN - Bacterial Effector Analyzer China 0unstable0.00
Antimicrobial Combination Networks Spain 0alive0.00
SSBD - Systems Science of Biological Dynamics database Japan 7alive2.33
* Citations derived from Google Scholar.