Database Commons a catalog of biological databases

Database Commons - Browse
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Database name Data type(s) Major organism(s) Location Citation* Status z-index
OrthoDB - Orthologs Database Switzerland 468alive46.80
MiCroKiTS - Midbody,Centrosome,Kinetochore,Telomere and Spindle China 29alive3.63
PHI-base - Pathogen-Host Interactions database United Kingdom 340alive28.05
Genomicus - Genomes in Evolution France 182alive22.52
HRaP - Occurrence of HomoRepeats and Patterns in Eukaryotic and Bacterial Proteomes Russian Federation 6alive1.47
Ensembl Genomes - Ensembl Genome Annotation System United Kingdom 293alive36.63
RDP - Ribosomal Database Project United States 11954alive433.89
MycoCosm - The fungal genomics resource United States 93unstable18.37
ValidNESs - Validated NES-containing proteins, functional NES sites and NES predictions Taiwan 21unstable3.86
CFGP - Comparative Fungal Genomics Platform Korea Rep. 102unstable5.71
FungiDB - FungiDB United States 47alive7.83
CPGR - Comprehensive Phytopathogen Genomics Resource United States 10alive1.43
FunSecKB - Fungal Secretome KnowledgeBase United States 56alive7.92
DFVF - Database of Known Fungal Virulence Factors United States 5alive0.82
GnpIS - Genetic and Genomic Information System France 9unstable0.49
PHYMYCO-DB France 15alive2.40
GCM - Global Catalogue of Microorganisms China 7alive1.40
PA-GOSUB - Proteome Analyst: Gene Ontology Molecular Function and Subcellular Localization Canada 29unstable2.03
PEDANT - Protein Extraction, Description and ANalysis Tool Germany 523alive30.76
APD - Antimicrobial Peptide Database United States 572alive62.28
dbRES - dbRES China 20unstable0.87
HPMCD - Human Pan-Microbe Communities Database United Kingdom 1alive0.50
DBAASP - Database of Antimicrobial Activity and Structure of Peptides Georgia 9alive2.25
Assembly United States 4unstable0.82
DESM - Microbial Knowledge Exploration Systems Saudi Arabia 1unstable0.46
mycoCLAP - Characterized Lignocellulose-Active Proteins of Fungal Origin Canada 0unstable0.00
CAMPR3 - Collection of Anti-Microbial Peptides India 1alive0.49
CSDBs - Carbohydrate Structure Databases Russian Federation 2alive1.00
CGDB - Circadian Gene DataBase China 0alive0.00
antiSMASH-DB - antibiotics & Secondary Metabolite Analysis SHell database Denmark 2unstable1.14
ORDB - Olfactory Receptor DataBase United States 71dead0.00
DemaDb Malaysia 2alive1.00
SilkPathDB - Silkworm Pathogen Database China 0unstable0.00
ICG - A knowledgebase of Internal Control Genes for RT-qPCR normalization China 0alive0.00
* Citations derived from Google Scholar.
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