Database Commons a catalog of biological databases

Database Commons - Browse
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Database name Data type(s) Major organism(s) Location Citation* Status z-index
COXPRESdb - Coexpression Database Japan 230alive23.00
lncRNAdb Australia 351alive49.64
InParanoid - ortholog groups with inparalogs Sweden 1253alive95.42
AHTPDB - Database of Antihypertensive Peptides India 7alive2.33
NONCODE - Noncoding RNAs China 637unstable35.28
TFBSshape - DNA shape features of transcription factor binding sites United States 39unstable8.97
GEISHA - Gallus Expression In Situ Hybridization Analysis United States 113alive7.83
ChIPBase China 199unstable26.67
QTLdb - Animal QTL database United States 143unstable16.59
H2DB - Heritability Database Annotating with Trait-Associated Genomic Loci Japan 1unstable0.19
Pigment_Cell United States 3unstable0.13
APADB Germany 8alive1.98
EpimiR - Database of Curated Mutual Regulation Between epigenetic Modifications and miRNAs China 8unstable1.50
miRIAD - Intragenic MicroRNA Database Germany 4unstable0.53
C-It Germany 11alive1.36
MPID-T2 - MHC-Peptide Interaction Database-TR version 2 Australia 8unstable0.77
DetoxiProt - An integrated database of detoxification proteins China 3unstable0.26
ECgene - ECgene Korea Rep. 167unstable6.29
PolyA_DB United States 83alive6.38
GeneNet - The GeneNet system Russian Federation 68alive5.18
ChickVD - Chicken Variation Database China 46alive3.40
GALA - Genome ALignments and Annotations United States 84alive5.60
deepBase - deepBase China 102unstable3.31
Transterm New Zealand 108alive6.55
ABS - database of Annotated regulatory Binding Sites from orthologous promoters Spain 68alive5.67
DBD - Transcription factor prediction database United Kingdom 156unstable12.22
ExDom - ExDom United States 10unstable0.23
TranspoGene - TranspoGene Israel 56alive5.54
Gallus GBrowse - A Unified Genomic Database for the Chicken United States 14unstable0.22
OPTIC - Orthologous and Paralogous Transcripts in Clades United Kingdom 32alive3.07
Greglist - Database of G-quadruplex Regulated Genes China 43unstable2.71
AnimalQTLdb - Animal Quantitative Trait Loci (QTL) database United States 338unstable17.82
GenBank - GenBank United States 46415unstable492.28
piRNA cluster db - piRNA cluster database Germany 29unstable4.49
MouseNet - Probabilistic Functional Gene Network for Laboratory Mouse,Mus Musculus Korea Rep. 0unstable0.00
BIG Data Center - BIG Data Center for Life & Health Sciences China 12alive12.00
R-loopDB Singapore 0alive0.00
* Citations derived from Google Scholar.
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