Database Commons a catalog of biological databases

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Database name Data type(s) Major organism(s) Location Citation* Status z-index
RiceVarMap - Rice Variation Map China 9alive2.97
SNP-Seek database - SNP-Seek Database Philippines 53unstable12.01
Reactome - A Curated Pathway Database United States 615unstable127.61
ppdb - plantpromoterdb Japan 19alive4.75
LSD - Leaf Senescence DataBase China 42unstable5.40
RiceWiki China 7alive1.73
H2DB - Heritability Database Annotating with Trait-Associated Genomic Loci Japan 1alive0.20
MIPS PlantsDB - Plant Genome and Systems Biology Germany 43alive8.60
TropGeneDB - tropical gene database France 34alive2.36
OrysPSSP - A Comparative Platform for Small Secreted Proteins from Rice and Other Plants China 8unstable1.17
RGKbase - Rice Genome Knowledgebase China 9unstable1.10
RiceXPro - Rice Expression Profile Database Japan 189alive26.46
RiceFREND - Rice Functionally Related Gene Expression Network Database Japan 29alive5.68
SRA - Sequence Read Archive United States -unstable-
MetaCrop - Metabolic pathways in crop plants Germany 73alive7.23
PmiRKB - Plant microRNA Knowledge Base China 19alive2.66
KaPPA-View4 - Kazusa Plant Pathway Viewer Japan 36alive5.14
the CEREALAB database - Cereals genotypic phenotypic source Italy 16unstable1.28
QlicRice - QTL and Loci Interaction Channels in Rice India 6unstable0.28
BFGR - Biofuel Feedstock Genomics Resource United States 12alive2.00
RiceSRTFDB - Rice Stress-Responsive Transcription Factor Database India 9alive1.76
RAP-DB - Rice Annotation Project Database Japan 286alive28.03
UniVIO - Uniformed Viewer for Integrative Omics Japan 13alive2.57
ERISdb - ERISdb Poland 7alive1.39
CoP - Co-expressed biological Processes Japan 51alive6.31
EXPath - EXPath Taiwan 2alive0.67
Rice Annotation Project Database (RAP-DB) Japan 117alive23.40
HapRice Japan 13alive3.22
RAD - Rice Annotation Database Japan 15unstable0.45
Transterm New Zealand 108alive6.48
AS-ALPS - Alternative Splicing-induced Alteration of Protein Structure Japan 25unstable2.61
AutoSNPdb Australia 69alive7.59
OryGenesDB - An Interactive Tool for Rice Reverse Genetics France 28alive3.11
RiceGeneThresher Thailand 10alive1.10
RAPESEED - The Shanghai RAPESEED Database China 21unstable0.34
OTL - Oryza Tag Line Database France 51alive5.10
PlantTribes United States 57unstable5.13
CSRDB - Cereal small RNAs Database United States 91alive8.27
POGs/PlantRBP - POGs/PlantRBP United States 31dead0.00
PlantQTL-GE - A database system for identifying candidate genes in rice and Arabidopsis by gene expression and QTL information China 21dead0.00
RMD - Rice Mutant Database China 129unstable6.24
GenBank - GenBank United States 46415unstable604.80
IC4R - Information Commons for Rice China 1alive0.50
PlantDHS - A plant DNase I hypersensitive site database United States 3unstable1.42
CANTATAdb - A database of long non-coding RNAs in plants Poland 1alive0.50
HRGD - Heterosis Related gene Database China 6unstable0.63
BIG Data Center - BIG Data Center for Life & Health Sciences China 12alive12.00
Ricebase United States 2dead0.00
RiceATM Taiwan 0alive0.00
* Citations derived from Google Scholar.
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