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Database Commons - RCPedia

RCPedia

Citations: 5

z-index 0.53

Short name RCPedia
Full name a database of retrocopied genes.
Description Retrocopy is the result of a process in which mRNAs are reverse-transcribed into cDNA and inserted back into a new position on the genome, usually by retroelement machinery.
URL http://www.bioinfo.mochsl.org.br/rcpedia/
Year founded 2011
Last update & version 2013-02-05    v4.0
Availability Free to all users
University/Institution hosted Syrian-Lebanese Hospital
Address São Paulo 01308-060, Brazil
City São Paulo
Province/State
Country/Region Brazil
Contact name Fabio C. P. Navarro
Contact email fnavarro@usp.br
Data type(s)
Major organism(s)
Keyword(s)
  • cDNA
  • Retrocopy
Publication(s)
  • RCPedia: a database of retrocopied genes. [PMID: 23457042]

    Fábio C P Navarro, Pedro A F Galante
    Bioinformatics (Oxford, England) 2013:29(9)
    5 Citations (Google Scholar as of 2016-03-02)

    Abstract: Retrocopies are copies of mature RNAs that are usually devoid of regulatory sequences and introns. They have routinely been classified as processed pseudo-genes with little or no biological relevance. However, recent findings have revealed functional roles for retrocopies, as well as their high frequency in some organisms, such as primates. Despite their increasing importance, there is no user-friendly and publicly available resource for the study of retrocopies. Here, we present RCPedia, an integrative and user-friendly database designed for the study of retrocopied genes. RCPedia contains a complete catalogue of the retrocopies that are known to be present in human and five other primate genomes, their genomic context, inter-species conservation and gene expression data. RCPedia also offers a streamlined data representation and an efficient query system. RCPedia is available at http://www.bioinfo.mochsl.org.br/rcpedia.

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Tags

DNA
Gorilla gorilla Homo sapiens Marmoset Pan troglodytes Pongo abelii Rhesus macaque
cDNA Retrocopy

Record metadata

  • Created on: 2015-06-30
  • Curated by:
    • Lin Xia [2016-05-08]
    • Lin Xia [2016-04-15]
    • Lin Xia [2016-04-01]
    • Mengwei Li [2016-02-20]
Stats