Database Commons a catalog of biological databases

Database Commons - arrayMap

arrayMap

Citations: 0

z-index 0.00

Short name arrayMap
Full name
Description arrayMap is a curated reference database and bioinformatics resource targeting copy number profiling data in human cancer. The arrayMap database provides an entry point for meta-analysis and systems level data integration of high-resolution oncogenomic CNA data.
URL http://www.arraymap.org/
Year founded 2000
Last update & version 3/23/2015    v1.0
Availability Free to all users
University/Institution hosted University of Zurich
Address 8057 Zurich, Switzerland
City Zurich
Province/State
Country/Region Switzerland
Contact name Michael Baudis
Contact email michael.baudis@imls.uzh.ch
Data type(s)
Major organism(s)
Keyword(s)
  • cancer
  • CNV
Publication(s)
  • arrayMap 2014: an updated cancer genome resource. [PMID: 25428357]

    Haoyang Cai, Saumya Gupta, Prisni Rath, Ni Ai, Michael Baudis
    Nucleic acids research 2015:43(Database issue)
    Citation (to be updated)

    Abstract: Somatic copy number aberrations (CNA) represent a mutation type encountered in the majority of cancer genomes. Here, we present the 2014 edition of arrayMap (http://www.arraymap.org), a publicly accessible collection of pre-processed oncogenomic array data sets and CNA profiles, representing a vast range of human malignancies. Since the initial release, we have enhanced this resource both in content and especially with regard to data mining support. The 2014 release of arrayMap contains more than 64,000 genomic array data sets, representing about 250 tumor diagnoses. Data sets included in arrayMap have been assembled from public repositories as well as additional resources, and integrated by applying custom processing pipelines. Online tools have been upgraded for a more flexible array data visualization, including options for processing user provided, non-public data sets. Data integration has been improved by mapping to multiple editions of the human reference genome, with the majority of the data now being available for the UCSC hg18 as well as GRCh37 versions. The large amount of tumor CNA data in arrayMap can be freely downloaded by users to promote data mining projects, and to explore special events such as chromothripsis-like genome patterns. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

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Database Commons - Word Cloud

Accessibility

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200 OK2016-03-07
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200 OK2016-02-19
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200 OK2016-02-15
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200 OK2016-01-29
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Tags

Disease DNA
Homo sapiens
cancer CNV

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Mengwei Li [2016-03-31]
    • Mengwei Li [2016-03-28]
    • Mengwei Li [2015-11-26]
    • Lina Ma [2015-06-29]
    • Mengwei Li [2015-06-26]
Stats