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Database Commons - CGED

CGED

Citations: 46

z-index 0.00

Short name CGED
Full name Cancer Gene Expression data
Description Cancer gene expression database (CGED), the expression and clinical data are presented in a way useful for scientists interested in specific genes or biological functions.
URL http://cged.hgc.jp
Year founded 2004
Last update & version     
Availability Not Available
University/Institution hosted University of Tokyo
Address 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8561, Japan
City Tokyo
Province/State
Country/Region Japan
Contact name Kikuya Kato
Contact email katou-ki@mc.pref.osaka.jp
Data type(s)
Major organism(s)
Keyword(s)
  • cancer
Publication(s)
  • Cancer gene expression database (CGED): a database for gene expression profiling with accompanying clinical information of human cancer tissues. [PMID: 15608255]

    Kikuya Kato, Riu Yamashita, Ryo Matoba, Morito Monden, Shinzaburo Noguchi, Toshihisa Takagi, Kenta Nakai
    Nucleic acids research 2005:33(Database issue)
    46 Citations (Google Scholar as of 2016-02-29)

    Abstract: Gene expression profiling of cancer tissues is expected to contribute to our understanding of cancer biology as well as developments of new methods of diagnosis and therapy. Our collaborative efforts in Japan have been mainly focused on solid tumors such as breast, colorectal and hepatocellular cancers. The expression data are obtained by a high-throughput RT-PCR technique, and patients are recruited mainly from a single hospital. In the cancer gene expression database (CGED), the expression and clinical data are presented in a way useful for scientists interested in specific genes or biological functions. The data can be retrieved either by gene identifiers or by functional categories defined by Gene Ontology terms or the Swiss-Prot annotation. Expression patterns of multiple genes, selected by names or similarity search of the patterns, can be compared. Visual presentation of the data with sorting function enables users to easily recognize of relationships between gene expression and clinical parameters. Data for other cancers such as lung and thyroid cancers will be added in the near future. The URL of CGED is http://cged.hgc.jp.

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Tags

Disease Expression
Homo sapiens
cancer

Record metadata

  • Created on: 2015-07-14
  • Curated by:
    • Mengwei Li [2016-03-31]
    • Mengwei Li [2016-03-29]
    • Mengwei Li [2015-12-02]
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