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Database Commons - GeneTide

GeneTide

Citations: 10

z-index 0.00

Short name GeneTide
Full name Gene Terra Incognita Discovery Endeavor
Description GeneTide, the Gene Terra Incognita Discovery Endeavor (http://genecards.weizmann.ac.il/genetide/), is a transcriptome-focused database which aims to enhance GeneCards with additional expressed sequence tag (EST)-based genes.
URL http://genecards.weizmann.ac.il/genetide/
Year founded 2004
Last update & version 2007-04-24    v1.3
Availability Free to all users
University/Institution hosted The Weizmann Institute of Science
Address Rehovot 76100, Israel
City Rehovot
Province/State
Country/Region Israel
Contact name Maxim Shklar
Contact email maxim.shklar@weizmann.ac.il
Data type(s)
Major organism(s)
Keyword(s)
  • EST
Publication(s)
  • GeneTide--Terra Incognita Discovery Endeavor: a new transcriptome focused member of the GeneCards/GeneNote suite of databases. [PMID: 15608261]

    Maxim Shklar, Liora Strichman-Almashanu, Orit Shmueli, Michael Shmoish, Marilyn Safran, Doron Lancet
    Nucleic acids research 2005:33(Database issue)
    10 Citations (Google Scholar as of 2016-02-29)

    Abstract: GeneCards is an automatically mined database of human genes that strives to create, along with its auxiliary databases--GeneLoc, GeneNote and GeneAnnot--the most inclusive resource of gene-centered information of the human genome. GeneTide, the Gene Terra Incognita Discovery Endeavor (http://genecards.weizmann.ac.il/genetide/), the newest addition to this family, is a transcriptome-focused database which aims to enhance GeneCards with additional expressed sequence tag (EST)-based genes. This is achieved by comprehensively mapping >85% of the approximately 5.6 million human ESTs currently available at dbEST to known genes by means of data mining and integration of genomic resources including UniGene, DoTS, AceView and in-house resources. GeneTide thus creates comprehensive links between ESTs and GeneCards genes. Furthermore, groups of unassociated transcripts serve as a basis for defining novel EST-based GeneCards Candidates (EGCs). These EGCs, nearly 25,000 of which were defined in version 0.3 of GeneTide, are further annotated with various parameters, including splicing evidence and expression data extracted from the GeneNote database, to determine their validity as possible de novo genes.

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Tags

Expression RNA
Homo sapiens
EST

Record metadata

  • Created on: 2015-07-14
  • Curated by:
    • Lina Ma [2016-04-08]
    • Lin Liu [2016-03-26]
    • Mengwei Li [2016-02-20]
    • Jian Sang [2015-12-05]
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