Database Commons a catalog of biological databases

Database Commons - SIEGE

SIEGE

Citations: 28

z-index 0.00

Short name SIEGE
Full name Smoking Induced Epithelial Gene Expression
Description The SIEGE (Smoking Induced Epithelial Gene Expression) database is a clinical resource for compiling and analyzing gene expression data from epithelial cells of the human intra-thoracic airway.
URL http://pulm.bumc.bu.edu/siegeDB
Year founded 2004
Last update & version 2005-01-01    v1.0
Availability Not Available
University/Institution hosted Boston University
Address 44 Cummington Street, Boston, MA 02215, USA
City Boston
Province/State MA
Country/Region United States
Contact name Vishal Shah
Contact email vshah@bu.edu
Data type(s)
Major organism(s)
Keyword(s)
  • gene expression
  • Smoking Induced
Publication(s)
  • SIEGE: Smoking Induced Epithelial Gene Expression Database. [PMID: 15608264]

    Vishal Shah, Sriram Sridhar, Jennifer Beane, Jerome S Brody, Avrum Spira
    Nucleic acids research 2005:33(Database issue)
    28 Citations (Google Scholar as of 2016-03-01)

    Abstract: The SIEGE (Smoking Induced Epithelial Gene Expression) database is a clinical resource for compiling and analyzing gene expression data from epithelial cells of the human intra-thoracic airway. This database supports a translational research study whose goal is to profile the changes in airway gene expression that are induced by cigarette smoke. RNA is isolated from airway epithelium obtained at bronchoscopy from current-, former- and never-smoker subjects, and hybridized to Affymetrix HG-U133A Genechips, which measure the level of expression of approximately 22,500 human transcripts. The microarray data generated along with relevant patient information is uploaded to SIEGE by study administrators using the database's web interface, found at http://pulm.bumc.bu.edu/siegeDB. PERL-coded scripts integrated with SIEGE perform various quality control functions including the processing, filtering and formatting of stored data. The R statistical package is used to import database expression values and execute a number of statistical analyses including t-tests, correlation coefficients and hierarchical clustering. Values from all statistical analyses can be queried through CGI-based tools and web forms found on the 'Search' section of the database website. Query results are embedded with graphical capabilities as well as with links to other databases containing valuable gene resources, including Entrez Gene, GO, Biocarta, GeneCards, dbSNP and the NCBI Map Viewer.

Community reviews

Data
quality & quantity
Content organization & presentation
System accessibility & reliability
Reviewed by

Word cloud (embeddable)

Database Commons - Word Cloud

Accessibility

Rate of accessibility:
HTTP status codeDate requested
404 Failed2018-11-16
404 Failed2018-11-13
404 Failed2018-11-09
404 Failed2018-11-06
404 Failed2018-11-02
404 Failed2018-10-30
404 Failed2018-10-26
404 Failed2018-10-23
404 Failed2018-10-19
404 Failed2018-10-16
404 Failed2018-10-12
404 Failed2018-10-09
404 Failed2018-10-05
404 Failed2018-10-02
404 Failed2018-09-28
404 Failed2018-09-25
404 Failed2018-09-21
404 Failed2018-09-18
404 Failed2018-09-14
404 Failed2018-09-11
404 Failed2018-09-07
404 Failed2018-09-04
404 Failed2018-08-31
404 Failed2018-08-28
404 Failed2018-08-24
404 Failed2018-08-21
404 Failed2018-08-17
404 Failed2018-08-14
404 Failed2018-08-10
404 Failed2018-08-07
404 Failed2018-08-03
404 Failed2018-07-31
404 Failed2018-07-27
404 Failed2018-07-24
404 Failed2018-07-20
404 Failed2018-07-17
404 Failed2018-07-13
404 Failed2018-07-10
404 Failed2018-07-06
404 Failed2018-07-03
404 Failed2018-06-29
404 Failed2018-06-26
404 Failed2018-06-22
404 Failed2018-06-19
404 Failed2018-06-15
404 Failed2018-06-12
404 Failed2018-06-08
404 Failed2018-06-05
404 Failed2018-06-01
404 Failed2018-05-29
404 Failed2018-05-25
404 Failed2018-05-22
404 Failed2018-05-18
404 Failed2018-05-15
404 Failed2018-05-11
404 Failed2018-05-08
404 Failed2018-05-04
404 Failed2018-05-01
404 Failed2018-04-27
404 Failed2018-04-24
404 Failed2018-04-20
404 Failed2018-04-17
404 Failed2018-04-13
404 Failed2018-04-10
404 Failed2018-04-06
404 Failed2018-04-03
404 Failed2018-02-27
404 Failed2018-02-23
404 Failed2018-02-20
404 Failed2018-02-16
404 Failed2018-02-13
404 Failed2018-02-09
404 Failed2018-02-06
404 Failed2018-02-02
404 Failed2018-01-30
404 Failed2018-01-26
404 Failed2018-01-23
404 Failed2018-01-19
404 Failed2018-01-16
404 Failed2018-01-12
404 Failed2018-01-09
404 Failed2018-01-05
404 Failed2018-01-02
404 Failed2017-12-29
404 Failed2017-12-26
404 Failed2017-12-22
404 Failed2017-12-19
404 Failed2017-12-15
404 Failed2017-12-12
404 Failed2017-12-08
404 Failed2017-12-05
404 Failed2017-12-01
404 Failed2017-11-28
404 Failed2017-11-24
404 Failed2017-11-21
404 Failed2017-11-17
404 Failed2017-11-14
404 Failed2017-11-10
404 Failed2017-11-07
404 Failed2017-11-03
404 Failed2017-10-31
404 Failed2017-10-27
404 Failed2017-10-24
404 Failed2017-10-20
404 Failed2017-10-17
404 Failed2017-10-13
404 Failed2017-10-10
404 Failed2017-10-06
404 Failed2017-10-03
404 Failed2017-09-29
404 Failed2017-09-26
404 Failed2017-09-22
404 Failed2017-09-19
404 Failed2017-09-15
404 Failed2017-09-12
404 Failed2017-09-08
404 Failed2017-09-05
404 Failed2017-09-01
404 Failed2017-08-29
404 Failed2017-08-25
404 Failed2017-08-22
404 Failed2017-08-18
404 Failed2017-08-15
404 Failed2017-08-11
404 Failed2017-08-08
404 Failed2017-08-04
404 Failed2017-08-01
404 Failed2017-07-28
404 Failed2017-07-25
404 Failed2017-07-21
404 Failed2017-07-18
404 Failed2017-07-14
404 Failed2017-07-04
404 Failed2017-06-30
404 Failed2017-06-27
404 Failed2017-06-23
404 Failed2017-06-20
404 Failed2017-06-16
404 Failed2017-06-13
404 Failed2017-06-09
404 Failed2017-06-06
404 Failed2017-06-02
404 Failed2017-05-30
404 Failed2017-05-26
404 Failed2017-05-23
404 Failed2017-05-19
404 Failed2017-05-16
404 Failed2017-05-12
404 Failed2017-05-09
404 Failed2017-05-05
404 Failed2017-05-02
404 Failed2017-04-28
404 Failed2017-04-25
404 Failed2017-04-21
404 Failed2017-04-18
404 Failed2017-04-14
404 Failed2017-04-11
404 Failed2017-04-07
404 Failed2017-04-04
404 Failed2017-03-31
404 Failed2017-03-28
404 Failed2017-03-24
404 Failed2017-03-21
404 Failed2017-03-17
404 Failed2017-03-14
404 Failed2017-03-10
404 Failed2017-03-07
404 Failed2017-03-03
404 Failed2017-02-28
404 Failed2017-02-24
404 Failed2017-02-21
404 Failed2017-02-17
404 Failed2017-02-14
404 Failed2017-02-10
404 Failed2017-02-07
404 Failed2017-02-03
404 Failed2017-01-31
404 Failed2017-01-27
404 Failed2017-01-24
404 Failed2017-01-20
404 Failed2017-01-17
404 Failed2017-01-13
404 Failed2017-01-10
404 Failed2017-01-06
404 Failed2017-01-03
404 Failed2016-12-30
404 Failed2016-12-27
404 Failed2016-12-23
404 Failed2016-12-20
404 Failed2016-12-16
404 Failed2016-12-13
404 Failed2016-12-09
404 Failed2016-12-06
404 Failed2016-12-02
404 Failed2016-11-29
404 Failed2016-11-25
404 Failed2016-11-22
404 Failed2016-11-18
404 Failed2016-11-15
404 Failed2016-11-11
404 Failed2016-11-08
404 Failed2016-11-04
404 Failed2016-11-01
404 Failed2016-10-28
404 Failed2016-10-25
404 Failed2016-10-21
404 Failed2016-10-18
404 Failed2016-10-14
404 Failed2016-10-11
404 Failed2016-10-07
404 Failed2016-10-04
404 Failed2016-09-30
404 Failed2016-09-27
404 Failed2016-09-23
404 Failed2016-09-20
404 Failed2016-09-16
404 Failed2016-09-13
404 Failed2016-09-09
404 Failed2016-09-06
404 Failed2016-09-02
404 Failed2016-08-30
404 Failed2016-08-26
404 Failed2016-08-23
404 Failed2016-08-19
404 Failed2016-08-16
404 Failed2016-08-12
404 Failed2016-08-09
404 Failed2016-08-05
404 Failed2016-08-02
404 Failed2016-07-29
404 Failed2016-07-26
404 Failed2016-07-22
404 Failed2016-07-19
404 Failed2016-07-15
404 Failed2016-07-12
404 Failed2016-07-08
404 Failed2016-07-05
404 Failed2016-07-01
404 Failed2016-06-28
404 Failed2016-06-24
404 Failed2016-06-21
404 Failed2016-06-17
404 Failed2016-06-14
404 Failed2016-06-10
404 Failed2016-06-07
404 Failed2016-06-03
404 Failed2016-05-31
404 Failed2016-05-27
404 Failed2016-05-24
404 Failed2016-05-20
404 Failed2016-05-17
404 Failed2016-05-13
404 Failed2016-05-10
404 Failed2016-05-06
404 Failed2016-05-03
404 Failed2016-04-29
404 Failed2016-04-26
404 Failed2016-04-22
404 Failed2016-04-19
404 Failed2016-04-15
404 Failed2016-04-12
404 Failed2016-04-08
404 Failed2016-04-05
404 Failed2016-04-01
404 Failed2016-03-29
404 Failed2016-03-28
404 Failed2016-03-25
404 Failed2016-03-23
404 Failed2016-03-21
404 Failed2016-03-18
404 Failed2016-03-16
404 Failed2016-03-14
404 Failed2016-03-11
404 Failed2016-03-09
404 Failed2016-03-07
404 Failed2016-03-04
404 Failed2016-03-02
404 Failed2016-02-29
404 Failed2016-02-26
404 Failed2016-02-24
404 Failed2016-02-22
404 Failed2016-02-19
404 Failed2016-02-17
404 Failed2016-02-15
404 Failed2016-02-14
404 Failed2016-02-12
404 Failed2016-02-10
404 Failed2016-02-08
404 Failed2016-02-07
404 Failed2016-02-05
404 Failed2016-02-03
404 Failed2016-02-01
404 Failed2016-01-31
404 Failed2016-01-29
404 Failed2016-01-27
404 Failed2016-01-25
404 Failed2016-01-24
404 Failed2016-01-22
404 Failed2016-01-20
404 Failed2016-01-18
404 Failed2016-01-17
404 Failed2016-01-15
404 Failed2016-01-13
404 Failed2016-01-11
404 Failed2016-01-10
404 Failed2016-01-08
404 Failed2016-01-06
404 Failed2016-01-04

Tags

DNA Expression
Homo sapiens
gene expression Smoking Induced

Record metadata

  • Created on: 2015-07-14
  • Curated by:
    • Lin Xia [2016-03-28]
Stats