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Database Commons - DP

DP

Citations: 15

z-index 0.00

Short name DP
Full name Dynamic Proteomics
Description Dynamic Proteomics is a database for dynamics and localizations of endogenous fluorescently-tagged proteins in living human cells.
URL http://www.dynamicproteomics.net/
Year founded 2010
Last update & version     v1.0
Availability Free to all users
University/Institution hosted Weizmann Institute of Science
Address Molecular Cell Biology Department, Weizmann Institute of Science, Rehovot, 76100, Israel
City Rehovot
Province/State
Country/Region Israel
Contact name Milana Frenkel-Morgenstern
Contact email milana.frenkel@weizmann.ac.il
Data type(s)
Major organism(s)
Keyword(s)
  • Dynamic Proteomics
  • endogenous fluorescently-tagged protein
Publication(s)
  • Dynamic Proteomics: a database for dynamics and localizations of endogenous fluorescently-tagged proteins in living human cells. [PMID: 19820112]

    Milana Frenkel-Morgenstern, Ariel A Cohen, Naama Geva-Zatorsky, Eran Eden, Jaime Prilusky, Irina Issaeva, Alex Sigal, Cellina Cohen-Saidon, Yuvalal Liron, Lydia Cohen, Tamar Danon, Natalie Perzov, Uri Alon
    Nucleic acids research 2010:38(Database issue)
    15 Citations (Google Scholar as of 2016-04-07)

    Abstract: Recent advances allow tracking the levels and locations of a thousand proteins in individual living human cells over time using a library of annotated reporter cell clones (LARC). This library was created by Cohen et al. to study the proteome dynamics of a human lung carcinoma cell-line treated with an anti-cancer drug. Here, we report the Dynamic Proteomics database for the proteins studied by Cohen et al. Each cell-line clone in LARC has a protein tagged with yellow fluorescent protein, expressed from its endogenous chromosomal location, under its natural regulation. The Dynamic Proteomics interface facilitates searches for genes of interest, downloads of protein fluorescent movies and alignments of dynamics following drug addition. Each protein in the database is displayed with its annotation, cDNA sequence, fluorescent images and movies obtained by the time-lapse microscopy. The protein dynamics in the database represents a quantitative trace of the protein fluorescence levels in nucleus and cytoplasm produced by image analysis of movies over time. Furthermore, a sequence analysis provides a search and comparison of up to 50 input DNA sequences with all cDNAs in the library. The raw movies may be useful as a benchmark for developing image analysis tools for individual-cell dynamic-proteomics. The database is available at http://www.dynamicproteomics.net/.

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Tags

Protein
Homo sapiens
Dynamic Proteomics endogenous fluorescently-tagged protein

Record metadata

  • Created on: 2015-07-15
  • Curated by:
    • Lina Ma [2016-04-07]
    • Jian Sang [2016-04-04]
    • Jian Sang [2015-12-07]
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