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Database Commons - SysZNF

SysZNF

Citations: 31

z-index 0.59

Short name SysZNF
Full name the C2H2 zinc finger gene database
Description SysZNF is an information resource for C2H2 Zinc Finger genes in human and mouse.
URL http://epgd.biosino.org/SysZNF/
Year founded 2006
Last update & version 2008-08-01    v3.0
Availability Free to all users
University/Institution hosted University of Rostock
Address D-18055 Rostock, Germany
City Rostock
Province/State
Country/Region Germany
Contact name Hans-Juergen Thiesen
Contact email hans-juergen.thiesen@med.uni-rostock.de
Data type(s)
Major organism(s)
Keyword(s)
  • C2H2 zinc finger gene
Publication(s)
  • SysZNF: the C2H2 zinc finger gene database. [PMID: 18974185]

    Guohui Ding, Peter Lorenz, Michael Kreutzer, Yixue Li, Hans-Juergen Thiesen
    Nucleic acids research 2009:37(Database issue)
    31 Citations (Google Scholar as of 2016-01-15)

    Abstract: C2H2 zinc finger (C2H2-ZNF) genes are one of the largest and most complex gene super-families in metazoan genomes, with hundreds of members in the human and mouse genome. The ongoing investigation of this huge gene family requires computational support to catalog genotype phenotype comparisons of C2H2-ZNF genes between related species and finally to extend the worldwide knowledge on the evolution of C2H2-ZNF genes in general. Here, we systematically collected all the C2H2-ZNF genes in the human and mouse genome and constructed a database named SysZNF to deposit available datasets related to these genes. In the database, each C2H2-ZNF gene entry consists of physical location, gene model (including different transcript forms), Affymetrix gene expression probes, protein domain structures, homologs (and synteny between human and mouse), PubMed references as well as links to relevant public databases. The clustered organization of the C2H2-ZNF genes is highlighted. The database can be searched using text strings or sequence information. The data are also available for batch download from the web site. Moreover, the graphical gene model/protein view system, sequence retrieval system and some other tools embedded in SysZNF facilitate the research on the C2H2 type ZNF genes under an integrative view. The database can be accessed from the URL http://epgd.biosino.org/SysZNF.

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Tags

DNA
Homo sapiens Mus musculus
C2H2 zinc finger gene

Record metadata

  • Created on: 2015-07-23
  • Curated by:
    • Lin Xia [2016-03-28]
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