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Database Commons - RTPrimerDB

RTPrimerDB

Citations: 102

z-index 8.05

Short name RTPrimerDB
Full name real-time quantitative PCR primers
Description RTPrimerDB is a freely accessible database and analysis tool for real-time quantitative PCR assays
URL http://www.rtprimerdb.org
Year founded 2003
Last update & version 2008-10-23    v1.0
Availability Free to all users
University/Institution hosted Ghent University
Address De Pintelaan 185, 9000 Gent, Belgium
City Gent
Province/State
Country/Region Belgium
Contact name Filip Pattyn
Contact email filip.pattyn@ugent.be
Data type(s)
Major organism(s)
Keyword(s)
  • primer
  • real-time quantitative PCR
Publication(s)
  • RTPrimerDB: the portal for real-time PCR primers and probes. [PMID: 18948285]

    Steve Lefever, Jo Vandesompele, Frank Speleman, Filip Pattyn
    Nucleic acids research 2009:37(Database issue)
    102 Citations (Google Scholar as of 2016-01-28)

    Abstract: RTPrimerDB (http://www.rtprimerdb.org) is a freely accessible database and analysis tool for real-time quantitative PCR assays. RTPrimerDB includes records with user submitted assays that are linked to genome information from reference databases and quality controlled using an in silico assay evaluation system. The primer evaluation tools intended to assess the specificity and to detect features that could negatively affect the amplification efficiency are combined into a pipeline to test custom-designed primer and probe sequences. An improved user feedback system guides users and submitters to enter practical remarks and details about experimental evaluation analyses. The database is linked with reference databases to allow the submission of assays for all genes and organisms officially registered in Entrez Gene and RefSeq. Records in RTPrimerDB are assigned unique and stable identifiers. The content is provided via an interactive web-based search system and is available for download in the recently developed RDML format and as bulk export file. RTPrimerDB is a one-stop portal for high-quality and highly annotated real-time PCR assays.

Community reviews

Data
quality & quantity
Content organization & presentation
System accessibility & reliability
Reviewed by

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Accessibility

Rate of accessibility:
HTTP status codeDate requested
200 OK2018-11-13
200 OK2018-11-09
200 OK2018-11-06
200 OK2018-11-02
200 OK2018-10-30
200 OK2018-10-26
200 OK2018-10-23
200 OK2018-10-19
200 OK2018-10-16
200 OK2018-10-12
200 OK2018-10-09
200 OK2018-10-05
200 OK2018-10-02
200 OK2018-09-28
200 OK2018-09-25
200 OK2018-09-21
200 OK2018-09-18
200 OK2018-09-14
200 OK2018-09-11
200 OK2018-09-07
200 OK2018-09-04
200 OK2018-08-31
200 OK2018-08-28
200 OK2018-08-24
200 OK2018-08-21
200 OK2018-08-17
200 OK2018-08-14
200 OK2018-08-10
200 OK2018-08-07
200 OK2018-08-03
200 OK2018-07-31
200 OK2018-07-27
200 OK2018-07-24
200 OK2018-07-20
200 OK2018-07-17
200 OK2018-07-13
200 OK2018-07-10
200 OK2018-07-06
200 OK2018-07-03
200 OK2018-06-29
200 OK2018-06-26
200 OK2018-06-22
200 OK2018-06-19
200 OK2018-06-15
200 OK2018-06-12
200 OK2018-06-08
200 OK2018-06-05
200 OK2018-06-01
200 OK2018-05-29
200 OK2018-05-25
200 OK2018-05-22
200 OK2018-05-18
200 OK2018-05-15
200 OK2018-05-11
200 OK2018-05-08
200 OK2018-05-04
200 OK2018-05-01
200 OK2018-04-27
200 OK2018-04-24
200 OK2018-04-20
200 OK2018-04-17
200 OK2018-04-13
200 OK2018-04-10
200 OK2018-04-06
200 OK2018-04-03
200 OK2018-02-27
200 OK2018-02-23
200 OK2018-02-20
200 OK2018-02-16
200 OK2018-02-13
200 OK2018-02-09
200 OK2018-02-06
200 OK2018-02-02
200 OK2018-01-30
200 OK2018-01-26
200 OK2018-01-23
200 OK2018-01-19
200 OK2018-01-16
200 OK2018-01-12
200 OK2018-01-09
200 OK2018-01-05
200 OK2018-01-02
200 OK2017-12-29
200 OK2017-12-26
200 OK2017-12-22
200 OK2017-12-19
200 OK2017-12-15
200 OK2017-12-12
200 OK2017-12-08
200 OK2017-12-05
200 OK2017-12-01
200 OK2017-11-28
200 OK2017-11-24
200 OK2017-11-21
200 OK2017-11-17
200 OK2017-11-14
200 OK2017-11-10
200 OK2017-11-07
200 OK2017-11-03
200 OK2017-10-31
200 OK2017-10-27
200 OK2017-10-24
200 OK2017-10-20
200 OK2017-10-17
200 OK2017-10-13
200 OK2017-10-10
200 OK2017-10-06
200 OK2017-10-03
200 OK2017-09-29
200 OK2017-09-26
200 OK2017-09-22
200 OK2017-09-19
200 OK2017-09-15
200 OK2017-09-12
200 OK2017-09-08
200 OK2017-09-05
200 OK2017-09-01
200 OK2017-08-29
200 OK2017-08-25
200 OK2017-08-22
200 OK2017-08-18
200 OK2017-08-15
200 OK2017-08-11
200 OK2017-08-08
200 OK2017-08-04
200 OK2017-08-01
200 OK2017-07-28
200 OK2017-07-25
200 OK2017-07-21
200 OK2017-07-18
200 OK2017-07-14
200 OK2017-07-04
200 OK2017-06-30
200 OK2017-06-27
200 OK2017-06-23
200 OK2017-06-20
200 OK2017-06-16
200 OK2017-06-13
200 OK2017-06-09
200 OK2017-06-06
200 OK2017-06-02
200 OK2017-05-30
200 OK2017-05-26
200 OK2017-05-23
200 OK2017-05-19
200 OK2017-05-16
200 OK2017-05-12
200 OK2017-05-09
200 OK2017-05-05
200 OK2017-05-02
200 OK2017-04-28
200 OK2017-04-25
200 OK2017-04-21
200 OK2017-04-18
200 OK2017-04-14
200 OK2017-04-11
200 OK2017-04-07
200 OK2017-04-04
200 OK2017-03-31
200 OK2017-03-28
200 OK2017-03-24
200 OK2017-03-21
200 OK2017-03-17
200 OK2017-03-14
200 OK2017-03-10
200 OK2017-03-07
200 OK2017-03-03
200 OK2017-02-28
200 OK2017-02-24
200 OK2017-02-21
200 OK2017-02-17
200 OK2017-02-14
200 OK2017-02-10
200 OK2017-02-07
200 OK2017-02-03
200 OK2017-01-31
200 OK2017-01-27
200 OK2017-01-24
200 OK2017-01-20
200 OK2017-01-17
200 OK2017-01-13
200 OK2017-01-10
200 OK2017-01-06
200 OK2017-01-03
200 OK2016-12-30
200 OK2016-12-27
200 OK2016-12-23
200 OK2016-12-20
200 OK2016-12-16
200 OK2016-12-13
200 OK2016-12-09
200 OK2016-12-06
200 OK2016-12-02
200 OK2016-11-29
200 OK2016-11-25
200 OK2016-11-22
200 OK2016-11-18
200 OK2016-11-15
200 OK2016-11-11
200 OK2016-11-08
200 OK2016-11-04
200 OK2016-11-01
200 OK2016-10-28
200 OK2016-10-25
200 OK2016-10-21
200 OK2016-10-18
200 OK2016-10-14
-1 Failed2016-10-11
200 OK2016-10-07
200 OK2016-10-04
200 OK2016-09-30
200 OK2016-09-27
200 OK2016-09-23
200 OK2016-09-20
200 OK2016-09-16
200 OK2016-09-13
200 OK2016-09-09
200 OK2016-09-06
200 OK2016-09-02
200 OK2016-08-30
-1 Failed2016-08-26
-1 Failed2016-08-23
-1 Failed2016-08-19
-1 Failed2016-08-16
-1 Failed2016-08-12
-1 Failed2016-08-09
-1 Failed2016-08-05
-1 Failed2016-08-02
-1 Failed2016-07-29
-1 Failed2016-07-26
-1 Failed2016-07-22
-1 Failed2016-07-19
-1 Failed2016-07-15
-1 Failed2016-07-12
-1 Failed2016-07-08
-1 Failed2016-07-05
-1 Failed2016-07-01
-1 Failed2016-06-28
-1 Failed2016-06-24
-1 Failed2016-06-21
-1 Failed2016-06-17
-1 Failed2016-06-14
-1 Failed2016-06-10
-1 Failed2016-06-07
-1 Failed2016-06-03
-1 Failed2016-05-31
-1 Failed2016-05-27
-1 Failed2016-05-24
-1 Failed2016-05-20
-1 Failed2016-05-17
-1 Failed2016-05-13
-1 Failed2016-05-10
-1 Failed2016-05-06
-1 Failed2016-05-03
-1 Failed2016-04-29
-1 Failed2016-04-26
-1 Failed2016-04-22
-1 Failed2016-04-19
-1 Failed2016-04-15
-1 Failed2016-04-12
-1 Failed2016-04-08
-1 Failed2016-04-05
-1 Failed2016-04-01
-1 Failed2016-03-29
-1 Failed2016-03-28
-1 Failed2016-03-25
-1 Failed2016-03-23
-1 Failed2016-03-21
-1 Failed2016-03-18
-1 Failed2016-03-16
-1 Failed2016-03-14
-1 Failed2016-03-11
-1 Failed2016-03-09
-1 Failed2016-03-07
-1 Failed2016-03-04
-1 Failed2016-03-02
-1 Failed2016-02-29
-1 Failed2016-02-26
-1 Failed2016-02-24
-1 Failed2016-02-22
-1 Failed2016-02-19
-1 Failed2016-02-17
-1 Failed2016-02-15
-1 Failed2016-02-14
-1 Failed2016-02-12
-1 Failed2016-02-10
-1 Failed2016-02-08
-1 Failed2016-02-07
-1 Failed2016-02-05
-1 Failed2016-02-03
-1 Failed2016-02-01
-1 Failed2016-01-31
-1 Failed2016-01-29
-1 Failed2016-01-27
-1 Failed2016-01-25
-1 Failed2016-01-24
-1 Failed2016-01-22
-1 Failed2016-01-20
-1 Failed2016-01-18
-1 Failed2016-01-17
-1 Failed2016-01-15
-1 Failed2016-01-13
-1 Failed2016-01-11
-1 Failed2016-01-10
-1 Failed2016-01-08
-1 Failed2016-01-06
-1 Failed2016-01-04

Tags

Expression
primer real-time quantitative PCR

Record metadata

  • Created on: 2015-07-27
  • Curated by:
    • Lina Ma [2016-08-26]
    • Zhang Zhang [2016-04-26]
    • Lin Xia [2016-04-01]
    • Lin Xia [2015-11-23]
Stats