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Database Commons - Araport

Araport

Citations: 9

z-index 0.57

Short name Araport
Full name Arabidopsis Information Portal
Description Araport is a one-stop-shop for Arabidopsis thaliana genomics. Araport offers gene and protein reports with orthology, expression, interactions and the latest annotation, plus analysis tools, community apps, and web services. Araport is 100% free and open-source. Registered members can save their analysis, publish science apps, and post announcements.
URL https://www.araport.org
Year founded 2014
Last update & version 2015-05-04    v1.0
Availability Free to all users
University/Institution hosted J. Craig Venter Institute
Address Rockville, MD 20850, USA
City Rockville
Province/State MD
Country/Region United States
Contact name Vivek Krishnakumar
Contact email vkrishna@jcvi.org
Data type(s)
Major organism(s)
Keyword(s)
  • genome
Publication(s)
  • Araport: the Arabidopsis information portal. [PMID: 25414324]

    Vivek Krishnakumar, Matthew R Hanlon, Sergio Contrino, Erik S Ferlanti, Svetlana Karamycheva, Maria Kim, Benjamin D Rosen, Chia-Yi Cheng, Walter Moreira, Stephen A Mock, Joseph Stubbs, Julie M Sullivan, Konstantinos Krampis, Jason R Miller, Gos Micklem, Matthew Vaughn, Christopher D Town
    Nucleic acids research 2015:43(Database issue)
    9 Citations (Google Scholar as of 2016-01-17)

    Abstract: The Arabidopsis Information Portal (https://www.araport.org) is a new online resource for plant biology research. It houses the Arabidopsis thaliana genome sequence and associated annotation. It was conceived as a framework that allows the research community to develop and release 'modules' that integrate, analyze and visualize Arabidopsis data that may reside at remote sites. The current implementation provides an indexed database of core genomic information. These data are made available through feature-rich web applications that provide search, data mining, and genome browser functionality, and also by bulk download and web services. Araport uses software from the InterMine and JBrowse projects to expose curated data from TAIR, GO, BAR, EBI, UniProt, PubMed and EPIC CoGe. The site also hosts 'science apps,' developed as prototypes for community modules that use dynamic web pages to present data obtained on-demand from third-party servers via RESTful web services. Designed for sustainability, the Arabidopsis Information Portal strategy exploits existing scientific computing infrastructure, adopts a practical mixture of data integration technologies and encourages collaborative enhancement of the resource by its user community. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

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Tags

DNA Expression Protein
Arabidopsis thaliana
genome

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Mengwei Li [2016-03-31]
    • Mengwei Li [2016-03-28]
    • Mengwei Li [2016-02-20]
    • Zhang Zhang [2016-01-17]
    • Mengwei Li [2015-11-25]
    • Zhang Zhang [2015-06-26]
Stats