Database Commons a catalog of biological databases

Database Commons - PBmice

PBmice

Citations: 34

z-index 0.00

Short name PBmice
Full name PB Mutagenesis Information CEnter
Description DNA transposon piggyBac (PB) is a newly established mutagen for large-scale mutagenesis in mice. PBmice is an integrated database system for storing, retrieving and displaying the information derived from PB insertions (INSERTs) in the mouse genome.
URL http://www.scbit.org/PBmice/
Year founded 2008
Last update & version 2008-01-01    
Availability Not Available
University/Institution hosted Fudan University
Address Shanghai 200433
City Shanghai
Province/State
Country/Region China
Contact name Ling V. Sun
Contact email yangzhong@fudan.edu.cn
Data type(s)
Major organism(s)
Keyword(s)
  • DNA transposon
  • insertion
  • piggyBac
Publication(s)
  • PBmice: an integrated database system of piggyBac (PB) insertional mutations and their characterizations in mice. [PMID: 17932058]

    Ling V Sun, Ke Jin, Yiming Liu, Wenwei Yang, Xing Xie, Lin Ye, Li Wang, Lin Zhu, Sheng Ding, Yi Su, Jie Zhou, Min Han, Yuan Zhuang, Tian Xu, Xiaohui Wu, Ning Gu, Yang Zhong
    Nucleic acids research 2008:36(Database issue)
    34 Citations (Google Scholar as of 2016-03-02)

    Abstract: DNA transposon piggyBac (PB) is a newly established mutagen for large-scale mutagenesis in mice. We have designed and implemented an integrated database system called PBmice (PB Mutagenesis Information CEnter) for storing, retrieving and displaying the information derived from PB insertions (INSERTs) in the mouse genome. This system is centered on INSERTs with information including their genomic locations and flanking genomic sequences, the expression levels of the hit genes, and the expression patterns of the trapped genes if a trapping vector was used. It also archives mouse phenotyping data linked to INSERTs, and allows users to conduct quick and advanced searches for genotypic and phenotypic information relevant to a particular or a set of INSERT(s). Sequence-based information can be cross-referenced with other genomic databases such as Ensembl, BLAST and GBrowse tools used in PBmice offer enhanced search and display for additional information relevant to INSERTs. The total number and genomic distribution of PB INSERTs, as well as the availability of each PB insertional LINE can also be viewed with user-friendly interfaces. PBmice is freely available at http://www.idmshanghai.cn/PBmice or http://www.scbit.org/PBmice/.

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Tags

DNA Expression
Mus musculus
DNA transposon insertion piggyBac

Record metadata

  • Created on: 2015-07-29
  • Curated by:
    • Shixiang Sun [2016-03-24]
    • Shixiang Sun [2015-11-19]
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