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Database Commons - Gallus GBrowse

Gallus GBrowse

Citations: 14

z-index 0.22

Short name Gallus GBrowse
Full name A Unified Genomic Database for the Chicken
Description Gallus GBrowse provides online access to genomic and other information about the chicken, Gallus gallus.
URL http://birdbase.net/cgi-bin/gbrowse/gallus/
Year founded 2007
Last update & version 2007-10-11    
Availability Not Available
University/Institution hosted University of Delaware
Address Newark, DE 19706
City Newark
Province/State DE
Country/Region United States
Contact name Carl J. Schmidt
Contact email schmidtc@udel.edu
Data type(s)
Major organism(s)
Keyword(s)
  • genomic database
Publication(s)
  • Gallus GBrowse: a unified genomic database for the chicken. [PMID: 17933775]

    Carl J Schmidt, Michael Romanov, Oliver Ryder, Vincent Magrini, Matthew Hickenbotham, Jarret Glasscock, Sean McGrath, Elaine Mardis, Lincoln D Stein
    Nucleic acids research 2008:36(Database issue)
    14 Citations (Google Scholar as of 2016-03-03)

    Abstract: Gallus GBrowse (http://birdbase.net/cgi-bin/gbrowse/gallus/) provides online access to genomic and other information about the chicken, Gallus gallus. The information provided by this resource includes predicted genes and Gene Ontology (GO) terms, links to Gallus In Situ Hybridization Analysis (GEISHA), Unigene and Reactome, the genomic positions of chicken genetic markers, SNPs and microarray probes, and mappings from turkey, condor and zebra finch DNA and EST sequences to the chicken genome. We also provide a BLAT server (http://birdbase.net/cgi-bin/webBlat) for matching user-provided sequences to the chicken genome. These tools make the Gallus GBrowse server a valuable resource for researchers seeking genomic information regarding the chicken and other avian species.

Community reviews

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Accessibility

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Tags

DNA Expression
Gallus gallus
genomic database

Record metadata

  • Created on: 2015-07-29
  • Curated by:
    • Lin Liu [2016-03-28]
    • Lina Ma [2015-12-31]
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