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Database Commons - SGN

SGN

Citations: 0

z-index 0.00

Short name SGN
Full name Sol Genomics Network
Description A web portal with genomic and phenotypic data,and analysis tools for the Solanaceae family and close relatives
URL http://solgenomics.net/
Year founded 2014
Last update & version 2015-03-25    v1.0
Availability Free to all users
University/Institution hosted Boyce Thompson Institute
Address Ithaca,NY 14853,USA
City Ithaca
Province/State NY
Country/Region United States
Contact name Lukas A. Mueller
Contact email lam87@cornell.edu
Data type(s)
Major organism(s)
Keyword(s)
  • genomic
  • phenotypic
Publication(s)
  • The Sol Genomics Network (SGN)--from genotype to phenotype to breeding. [PMID: 25428362]

    Noe Fernandez-Pozo, Naama Menda, Jeremy D Edwards, Surya Saha, Isaak Y Tecle, Susan R Strickler, Aureliano Bombarely, Thomas Fisher-York, Anuradha Pujar, Hartmut Foerster, Aimin Yan, Lukas A Mueller
    Nucleic acids research 2015:43(Database issue)
    Citation (to be updated)

    Abstract: The Sol Genomics Network (SGN, http://solgenomics.net) is a web portal with genomic and phenotypic data, and analysis tools for the Solanaceae family and close relatives. SGN hosts whole genome data for an increasing number of Solanaceae family members including tomato, potato, pepper, eggplant, tobacco and Nicotiana benthamiana. The database also stores loci and phenotype data, which researchers can upload and edit with user-friendly web interfaces. Tools such as BLAST, GBrowse and JBrowse for browsing genomes, expression and map data viewers, a locus community annotation system and a QTL analysis tools are available. A new tool was recently implemented to improve Virus-Induced Gene Silencing (VIGS) constructs called the SGN VIGS tool. With the growing genomic and phenotypic data in the database, SGN is now advancing to develop new web-based breeding tools and implement the code and database structure for other species or clade-specific databases. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

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Tags

DNA Phenotype
Solanaceae
genomic phenotypic

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Lin Xia [2016-03-28]
    • Lin Xia [2015-11-23]
    • Lin Xia [2015-06-28]
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