Database Commons a catalog of biological databases

Database Commons - SGDB

SGDB

Citations: 26

z-index 1.09

Short name SGDB
Full name Synthetic Gene Database
Description SGDB is a database of synthetic genes re-designed for optimizing protein over-expression.
URL http://www.evolvingcode.net/codon/sgdb/index.php
Year founded 2007
Last update & version 2007-01-01    v1.0
Availability Not Available
University/Institution hosted University of Maryland
Address 1000 Hilltop Circle, Baltimore, MD 21229, USA
City Baltimore
Province/State MD
Country/Region United States
Contact name Stephen J. Freeland
Contact email freeland@umbc.edu
Data type(s)
Major organism(s)
Keyword(s)
  • Synthetic Gene
Publication(s)
  • SGDB: a database of synthetic genes re-designed for optimizing protein over-expression. [PMID: 17062619]

    Gang Wu, Yuanpu Zheng, Imran Qureshi, Htar Thant Zin, Tyler Beck, Blazej Bulka, Stephen J Freeland
    Nucleic acids research 2007:35(Database issue)
    26 Citations (Google Scholar as of 2016-04-30)

    Abstract: Here we present the Synthetic Gene Database (SGDB): a relational database that houses sequences and associated experimental information on synthetic (artificially engineered) genes from all peer-reviewed studies published to date. At present, the database comprises information from more than 200 published experiments. This resource not only provides reference material to guide experimentalists in designing new genes that improve protein expression, but also offers a dataset for analysis by bioinformaticians who seek to test ideas regarding the underlying factors that influence gene expression. The SGDB was built under MySQL database management system. We also offer an XML schema for standardized data description of synthetic genes. Users can access the database at http://www.evolvingcode.net/codon/sgdb/index.php, or batch downloads all information through XML files. Moreover, users may visually compare the coding sequences of a synthetic gene and its natural counterpart with an integrated web tool at http://www.evolvingcode.net/codon/sgdb/aligner.php, and discuss questions, findings and related information on an associated e-forum at http://www.evolvingcode.net/forum/viewforum.php?f=27.

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HTTP status codeDate requested
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404 Failed2018-09-07
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-1 Failed2018-08-21
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-1 Failed2018-07-24
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-1 Failed2018-07-10
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403 Failed2016-12-02
403 Failed2016-11-29
403 Failed2016-11-25
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200 OK2016-11-18
200 OK2016-11-15
200 OK2016-11-11
200 OK2016-11-08
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200 OK2016-11-01
200 OK2016-10-28
200 OK2016-10-25
200 OK2016-10-21
200 OK2016-10-18
200 OK2016-10-14
200 OK2016-10-11
200 OK2016-10-07
200 OK2016-10-04
200 OK2016-09-30
-1 Failed2016-09-27
-1 Failed2016-09-23
-1 Failed2016-09-20
-1 Failed2016-09-16
-1 Failed2016-09-13
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200 OK2016-07-29
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200 OK2016-07-22
200 OK2016-07-19
200 OK2016-07-15
200 OK2016-07-12
200 OK2016-07-08
200 OK2016-07-05
200 OK2016-07-01
200 OK2016-06-28
200 OK2016-06-24
200 OK2016-06-21
200 OK2016-06-17
200 OK2016-06-14
200 OK2016-06-10
200 OK2016-06-07
200 OK2016-06-03
200 OK2016-05-31
200 OK2016-05-27
200 OK2016-05-24
200 OK2016-05-20
200 OK2016-05-17
200 OK2016-05-13
200 OK2016-05-10
200 OK2016-05-06
200 OK2016-05-03
200 OK2016-04-29
200 OK2016-04-26
200 OK2016-04-22
200 OK2016-04-19
200 OK2016-04-15
200 OK2016-04-12
200 OK2016-04-08
200 OK2016-04-05
200 OK2016-04-01
200 OK2016-03-29
200 OK2016-03-28
200 OK2016-03-25
200 OK2016-03-23
200 OK2016-03-21
200 OK2016-03-18
200 OK2016-03-16
200 OK2016-03-14
200 OK2016-03-11
200 OK2016-03-09
200 OK2016-03-07
200 OK2016-03-04
200 OK2016-03-02
200 OK2016-02-29
200 OK2016-02-26
200 OK2016-02-24
200 OK2016-02-22
200 OK2016-02-19
200 OK2016-02-17
200 OK2016-02-15
200 OK2016-02-14
200 OK2016-02-12
200 OK2016-02-10
200 OK2016-02-08
200 OK2016-02-07
200 OK2016-02-05
200 OK2016-02-03
200 OK2016-02-01
200 OK2016-01-31
200 OK2016-01-29
200 OK2016-01-27
200 OK2016-01-25
200 OK2016-01-24
200 OK2016-01-22
200 OK2016-01-20
200 OK2016-01-18
200 OK2016-01-17
200 OK2016-01-15
200 OK2016-01-13
-1 Failed2016-01-11
-1 Failed2016-01-10
-1 Failed2016-01-08
-1 Failed2016-01-06
-1 Failed2016-01-04

Tags

DNA Expression Protein
Synthetic Gene

Record metadata

  • Created on: 2015-08-10
  • Curated by:
    • Lin Xia [2016-03-28]
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