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Database Commons - NCBI Taxonomy Database

NCBI Taxonomy Database

Citations: 13

z-index 1.52

Short name NCBI Taxonomy Database
Full name NCBI Taxonomy Database
Description The Taxonomy Database is a curated classification and nomenclature for all of the organisms in the public sequence databases. This currently represents about 10% of the described species of life on the planet.
URL http://www.ncbi.nlm.nih.gov/taxonomy
Year founded 2015
Last update & version 2015-03-31    v1.0
Availability Free to all users
University/Institution hosted National Center for Biotechnology Information
Address Bethesda,MD 20894,USA
City Bethesda
Province/State MD
Country/Region United States
Contact name Scott Federhen
Contact email federhen@ncbi.nlm.nih.gov
Data type(s)
Major organism(s)
Keyword(s)
  • sequence
  • taxonomy
Publication(s)
  • Type material in the NCBI Taxonomy Database. [PMID: 25398905]

    Scott Federhen
    Nucleic acids research 2015:43(Database issue)
    13 Citations (Google Scholar as of 2015-12-27)

    Abstract: Type material is the taxonomic device that ties formal names to the physical specimens that serve as exemplars for the species. For the prokaryotes these are strains submitted to the culture collections; for the eukaryotes they are specimens submitted to museums or herbaria. The NCBI Taxonomy Database (http://www.ncbi.nlm.nih.gov/taxonomy) now includes annotation of type material that we use to flag sequences from type in GenBank and in Genomes. This has important implications for many NCBI resources, some of which are outlined below. Published by Oxford University Press on behalf of Nucleic Acids Research 2014. This work is written by (a) US Government employee(s) and is in the public domain in the US.

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Tags

DNA RNA
sequence taxonomy

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Lin Liu [2016-04-11]
    • Lin Liu [2016-03-27]
    • Li Yang [2015-06-26]
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