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Database Commons - BodyMap-Xs

BodyMap-Xs

Citations: 26

z-index 0.00

Short name BodyMap-Xs
Full name
Description BodyMap-Xs is a database for cross-species gene expression comparison.
URL http://bodymap.jp
Year founded 2006
Last update & version     
Availability Not Available
University/Institution hosted National Institute of Genetics
Address 1111 Yata, Mishima, Shizuoka 411-8540, Japan
City Shizuoka
Province/State
Country/Region Japan
Contact name Kousaku Okubo
Contact email kokubo@genes.nig.ac.jp
Data type(s)
Major organism(s)
Keyword(s)
  • EST
Publication(s)
  • BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression. [PMID: 16381946]

    Osamu Ogasawara, Makiko Otsuji, Kouji Watanabe, Takayasu Iizuka, Takuro Tamura, Teruyoshi Hishiki, Shoko Kawamoto, Kousaku Okubo
    Nucleic acids research 2006:34(Database issue)
    26 Citations (Google Scholar as of 2016-01-25)

    Abstract: BodyMap-Xs (http://bodymap.jp) is a database for cross-species gene expression comparison. It was created by the anatomical breakdown of 17 million animal expressed sequence tag (EST) records in DDBJ using a sorting program tailored for this purpose. In BodyMap-Xs, users are allowed to compare the expression patterns of orthologous and paralogous genes in a coherent manner. This will provide valuable insights for the evolutionary study of gene expression and identification of a responsive motif for a particular expression pattern. In addition, starting from a concise overview of the taxonomical and anatomical breakdown of all animal ESTs, users can navigate to obtain gene expression ranking of a particular tissue in a particular animal. This method may lead to the understanding of the similarities and differences between the homologous tissues across animal species. BodyMap-Xs will be automatically updated in synchronization with the major update in DDBJ, which occurs periodically.

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Tags

DNA Expression
EST

Record metadata

  • Created on: 2015-09-09
  • Curated by:
    • Mengwei Li [2016-03-31]
    • Mengwei Li [2016-03-29]
    • Mengwei Li [2015-11-29]
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