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Database Commons - MOPED

MOPED

Citations: 5

z-index 0.03

Short name MOPED
Full name Multi-Omics Profiling Expression Database
Description a multi-omics resource for human and model organisms
URL http://moped.proteinspire.org
Year founded 2014
Last update & version 2015-06-01    v2.7
Availability Free to all users
University/Institution hosted Seattle Children's Research Institute
Address Seattle,WA,USA 98101
City Seattle
Province/State WA
Country/Region United States
Contact name Eugene Kolker
Contact email eugene.kolker@seattlechildrens.org
Data type(s)
Major organism(s)
Keyword(s)
  • omics
Publication(s)
  • Beyond protein expression, MOPED goes multi-omics. [PMID: 25404128]

    Elizabeth Montague, Imre Janko, Larissa Stanberry, Elaine Lee, John Choiniere, Nathaniel Anderson, Elizabeth Stewart, William Broomall, Roger Higdon, Natali Kolker, Eugene Kolker
    Nucleic acids research 2015:43(Database issue)
    5 Citations (Google Scholar as of 2015-12-29)

    Abstract: MOPED (Multi-Omics Profiling Expression Database; http://moped.proteinspire.org) has transitioned from solely a protein expression database to a multi-omics resource for human and model organisms. Through a web-based interface, MOPED presents consistently processed data for gene, protein and pathway expression. To improve data quality, consistency and use, MOPED includes metadata detailing experimental design and analysis methods. The multi-omics data are integrated through direct links between genes and proteins and further connected to pathways and experiments. MOPED now contains over 5 million records, information for approximately 75,000 genes and 50,000 proteins from four organisms (human, mouse, worm, yeast). These records correspond to 670 unique combinations of experiment, condition, localization and tissue. MOPED includes the following new features: pathway expression, Pathway Details pages, experimental metadata checklists, experiment summary statistics and more advanced searching tools. Advanced searching enables querying for genes, proteins, experiments, pathways and keywords of interest. The system is enhanced with visualizations for comparing across different data types. In the future MOPED will expand the number of organisms, increase integration with pathways and provide connections to disease. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

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Tags

Expression Protein
Homo sapiens Mus musculus Nematoda Saccharomyces cerevisiae
omics

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Lin Liu [2016-03-27]
    • Zhang Zhang [2015-12-31]
    • Li Yang [2015-11-24]
    • Li Yang [2015-06-26]
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