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Database Commons - NNTC

NNTC

Citations: 0

z-index 0.00

Short name NNTC
Full name National NeuroAIDS Tissue Consortium
Description NNTC is an integrated database for HIV-related studies.
URL http://nntc-dcc.unmc.edu
Year founded 2015
Last update & version 2015-07-30    
Availability Free to all users
University/Institution hosted University of Nebraska Medical Center
Address Omaha, NE 68198, USA
City Omaha
Province/State NE
Country/Region United States
Contact name Howard S. Fox
Contact email hfox@unmc.edu
Data type(s)
Major organism(s)
Keyword(s)
  • HIV
Publication(s)
  • The National NeuroAIDS Tissue Consortium (NNTC) Database: an integrated database for HIV-related studies. [PMID: 26228431]

    Matyas F Cserhati, Sanjit Pandey, James J Beaudoin, Lorena Baccaglini, Chittibabu Guda, Howard S Fox
    Database : the journal of biological databases and curation 2015:2015
    Citation (to be updated)

    Abstract: We herein present the National NeuroAIDS Tissue Consortium-Data Coordinating Center (NNTC-DCC) database, which is the only available database for neuroAIDS studies that contains data in an integrated, standardized form. This database has been created in conjunction with the NNTC, which provides human tissue and biofluid samples to individual researchers to conduct studies focused on neuroAIDS. The database contains experimental datasets from 1206 subjects for the following categories (which are further broken down into subcategories): gene expression, genotype, proteins, endo-exo-chemicals, morphometrics and other (miscellaneous) data. The database also contains a wide variety of downloadable data and metadata for 95 HIV-related studies covering 170 assays from 61 principal investigators. The data represent 76 tissue types, 25 measurement types, and 38 technology types, and reaches a total of 33,017,407 data points. We used the ISA platform to create the database and develop a searchable web interface for querying the data. A gene search tool is also available, which searches for NCBI GEO datasets associated with selected genes. The database is manually curated with many user-friendly features, and is cross-linked to the NCBI, HUGO and PubMed databases. A free registration is required for qualified users to access the database. © The Author(s) 2015. Published by Oxford University Press.

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Tags

Disease Metadata
Homo sapiens
HIV

Record metadata

  • Created on: 2016-01-14
  • Curated by:
    • Lin Liu [2016-03-28]
    • Mengwei Li [2016-02-21]
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