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Database Commons - CircNet

CircNet

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Short name CircNet
Full name
Description CircNet database provides the following resources: (i) novel circRNAs, (ii) integrated miRNA-target networks, (iii) expression profiles of circRNA isoforms, (iv) genomic annotations of circRNA isoforms (e.g., 282,948 exon positions), and (v) sequences of circRNA isoforms.
URL http://circnet.mbc.nctu.edu.tw
Year founded 2015
Last update & version     
Availability Free to all users
University/Institution hosted National Chiao Tung University
Address HsinChu, Taiwan
City HsinChu
Province/State
Country/Region Taiwan
Contact name Administrator
Contact email bryan@mail.nctu.edu.tw
Data type(s)
Major organism(s)
Keyword(s)
  • circRNA
  • miRNA
Publication(s)
  • CircNet: a database of circular RNAs derived from transcriptome sequencing data. [PMID: 26450965]

    Yu-Chen Liu, Jian-Rong Li, Chuan-Hu Sun, Erik Andrews, Rou-Fang Chao, Feng-Mao Lin, Shun-Long Weng, Sheng-Da Hsu, Chieh-Chen Huang, Chao Cheng, Chun-Chi Liu, Hsien-Da Huang
    Nucleic acids research 2016:44(D1)
    Citation (to be updated)

    Abstract: Circular RNAs (circRNAs) represent a new type of regulatory noncoding RNA that only recently has been identified and cataloged. Emerging evidence indicates that circRNAs exert a new layer of post-transcriptional regulation of gene expression. In this study, we utilized transcriptome sequencing datasets to systematically identify the expression of circRNAs (including known and newly identified ones by our pipeline) in 464 RNA-seq samples, and then constructed the CircNet database (http://circnet.mbc.nctu.edu.tw/) that provides the following resources: (i) novel circRNAs, (ii) integrated miRNA-target networks, (iii) expression profiles of circRNA isoforms, (iv) genomic annotations of circRNA isoforms (e.g. 282 948 exon positions), and (v) sequences of circRNA isoforms. The CircNet database is to our knowledge the first public database that provides tissue-specific circRNA expression profiles and circRNA-miRNA-gene regulatory networks. It not only extends the most up to date catalog of circRNAs but also provides a thorough expression analysis of both previously reported and novel circRNAs. Furthermore, it generates an integrated regulatory network that illustrates the regulation between circRNAs, miRNAs and genes. © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

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200 OK2017-02-07
200 OK2017-02-03
200 OK2017-01-31
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200 OK2017-01-24
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200 OK2016-12-30
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200 OK2016-12-23
200 OK2016-12-20
200 OK2016-12-16
200 OK2016-12-13
200 OK2016-12-09
200 OK2016-12-06
200 OK2016-12-02
200 OK2016-11-29
200 OK2016-11-25
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200 OK2016-11-18
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200 OK2016-10-18
200 OK2016-10-14
200 OK2016-10-11
200 OK2016-10-07
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200 OK2016-08-09
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200 OK2016-05-27
200 OK2016-05-24
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200 OK2016-05-10
200 OK2016-05-06
200 OK2016-05-03
200 OK2016-04-29
200 OK2016-04-26
200 OK2016-04-22
200 OK2016-04-19
200 OK2016-04-15
200 OK2016-04-12
200 OK2016-04-08
200 OK2016-04-05
200 OK2016-04-01
200 OK2016-03-29
200 OK2016-03-28
200 OK2016-03-25
200 OK2016-03-23
200 OK2016-03-21
200 OK2016-03-18
200 OK2016-03-16
200 OK2016-03-14
200 OK2016-03-11
200 OK2016-03-09
200 OK2016-03-07
200 OK2016-03-04
200 OK2016-03-02
200 OK2016-02-29
200 OK2016-02-26
200 OK2016-02-24
200 OK2016-02-22
200 OK2016-02-19
200 OK2016-02-17
200 OK2016-02-15
200 OK2016-02-14
200 OK2016-02-12
200 OK2016-02-10
200 OK2016-02-08
200 OK2016-02-07
200 OK2016-02-05
200 OK2016-02-03
200 OK2016-02-01
200 OK2016-01-31
200 OK2016-01-29
200 OK2016-01-27
200 OK2016-01-25
200 OK2016-01-24
200 OK2016-01-22
200 OK2016-01-20
200 OK2016-01-18
200 OK2016-01-17

Tags

Expression Interaction and Network RNA
circRNA miRNA

Record metadata

  • Created on: 2016-01-16
  • Curated by:
    • Mengwei Li [2016-03-31]
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