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Database Commons - ANISEED

ANISEED

Citations: 2

z-index 0.46

Short name ANISEED
Full name
Description ANISEED is the main information system in the field of ascidian developmental biology.This new architecture was used to improve and enrich the description of Ciona intestinalis embryonic development, based on an improved genome assembly and gene model set, refined functional gene annotation, and anatomical ontologies, and a new collection of full ORF cDNAs.
URL http://www.aniseed.cnrs.fr/
Year founded 2010
Last update & version 2015-08-21    
Availability Free to all users
University/Institution hosted CNRS (Centre national de la recherche scientifique)
Address 1919 route de Mende, F-34090 Montpellier, France
City Montpellier
Province/State
Country/Region France
Contact name Patrick Lemaire
Contact email patrick.lemaire@crbm.cnrs.fr
Data type(s)
Major organism(s)
Keyword(s)
  • developmental biology
Publication(s)
  • ANISEED 2015: a digital framework for the comparative developmental biology of ascidians. [PMID: 26420834]

    Matija Brozovic, Cyril Martin, Christelle Dantec, Delphine Dauga, Mickaël Mendez, Paul Simion, Madeline Percher, Baptiste Laporte, Céline Scornavacca, Anna Di Gregorio, Shigeki Fujiwara, Mathieu Gineste, Elijah K Lowe, Jacques Piette, Claudia Racioppi, Filomena Ristoratore, Yasunori Sasakura, Naohito Takatori, Titus C Brown, Frédéric Delsuc, Emmanuel Douzery, Carmela Gissi, Alex McDougall, Hiroki Nishida, Hitoshi Sawada, Billie J Swalla, Hitoyoshi Yasuo, Patrick Lemaire
    Nucleic acids research 2016:44(D1)
    2 Citations (Google Scholar as of 2016-02-02)

    Abstract: Ascidians belong to the tunicates, the sister group of vertebrates and are recognized model organisms in the field of embryonic development, regeneration and stem cells. ANISEED is the main information system in the field of ascidian developmental biology. This article reports the development of the system since its initial publication in 2010. Over the past five years, we refactored the system from an initial custom schema to an extended version of the Chado schema and redesigned all user and back end interfaces. This new architecture was used to improve and enrich the description of Ciona intestinalis embryonic development, based on an improved genome assembly and gene model set, refined functional gene annotation, and anatomical ontologies, and a new collection of full ORF cDNAs. The genomes of nine ascidian species have been sequenced since the release of the C. intestinalis genome. In ANISEED 2015, all nine new ascidian species can be explored via dedicated genome browsers, and searched by Blast. In addition, ANISEED provides full functional gene annotation, anatomical ontologies and some gene expression data for the six species with highest quality genomes. ANISEED is publicly available at: http://www.aniseed.cnrs.fr. © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

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200 OK2016-01-17

Tags

DNA Expression Standard, Ontology and Nomenclature
Ascidian
developmental biology

Record metadata

  • Created on: 2016-01-17
  • Curated by:
    • Zhang Zhang [2016-04-26]
    • Mengwei Li [2016-04-17]
    • Mengwei Li [2016-03-31]
    • Mengwei Li [2016-03-28]
    • Lin Liu [2016-02-02]
    • Lin Liu [2016-01-17]
Stats