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Database Commons - MitoCarta

MitoCarta

Citations: 2

z-index 0.50

Short name MitoCarta
Full name An Inventory of Mammalian Mitochondrial Genes
Description MitoCarta2.0 is an inventory of 1158 human and mouse genes encoding proteins with strong support of mitochondrial localization.
URL http://www.broadinstitute.org/pubs/MitoCarta
Year founded 2008
Last update & version 2015    v2.0
Availability Free to all users
University/Institution hosted Massachusetts General Hospital
Address Boston, MA 02114, USA
City Boston
Province/State MA
Country/Region United States
Contact name Sarah E. Calvo
Contact email scalvo@broadinstitute.org
Data type(s)
Major organism(s)
Keyword(s)
  • mitochondrial localization
Publication(s)
  • MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins. [PMID: 26450961]

    Sarah E Calvo, Karl R Clauser, Vamsi K Mootha
    Nucleic acids research 2016:44(D1)
    2 Citations (Google Scholar as of 2016-01-27)

    Abstract: Mitochondria are complex organelles that house essential pathways involved in energy metabolism, ion homeostasis, signalling and apoptosis. To understand mitochondrial pathways in health and disease, it is crucial to have an accurate inventory of the organelle's protein components. In 2008, we made substantial progress toward this goal by performing in-depth mass spectrometry of mitochondria from 14 organs, epitope tagging/microscopy and Bayesian integration to assemble MitoCarta (www.broadinstitute.org/pubs/MitoCarta): an inventory of genes encoding mitochondrial-localized proteins and their expression across 14 mouse tissues. Using the same strategy we have now reconstructed this inventory separately for human and for mouse based on (i) improved gene transcript models, (ii) updated literature curation, including results from proteomic analyses of mitochondrial sub-compartments, (iii) improved homology mapping and (iv) updated versions of all seven original data sets. The updated human MitoCarta2.0 consists of 1158 human genes, including 918 genes in the original inventory as well as 240 additional genes. The updated mouse MitoCarta2.0 consists of 1158 genes, including 967 genes in the original inventory plus 191 additional genes. The improved MitoCarta 2.0 inventory provides a molecular framework for system-level analysis of mammalian mitochondria. © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

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Tags

Metabolic and Signaling Pathway Protein
Homo sapiens Mus musculus
mitochondrial localization

Record metadata

  • Created on: 2016-01-17
  • Curated by:
    • Lin Liu [2016-03-30]
    • Lin Liu [2016-01-27]
    • Lin Liu [2016-01-17]
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