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Database Commons - Membranome

Membranome

Citations: 1

z-index 0.61

Short name Membranome
Full name Membrane Proteome
Description Membranome database provides structural and functional data about single-spanning (bitopic) transmembrane proteins of six organisms (human, thale cress flowering plant, slim mold, baker's yeast, gut eubacteria, thermophilic methanogenic archaeabacteria) representing all kingdoms of life.
URL http://membranome.org/
Year founded 2013
Last update & version 2017-01-01    
Availability Free to all users
University/Institution hosted University of Michigan, Ann Arbor
Address MI 48109
City Ann Arbor
Province/State Michigan
Country/Region United States
Contact name Andrei L. Lomize
Contact email almz@umich.edu
Data type(s)
Major organism(s)
Keyword(s)
  • transmembrane protein
Publication(s)
  • Membranome: a database for proteome-wide analysis of single-pass membrane proteins. [PMID: 27510400]

    Andrei L Lomize, Mikhail A Lomize, Shean R Krolicki, Irina D Pogozheva
    Nucleic acids research 2017:45(D1)
    1 Citations (Google Scholar as of 2017-02-14)

    Abstract: The Membranome database was developed to assist analysis and computational modeling of single-pass (bitopic) transmembrane (TM) proteins and their complexes by providing structural information about these proteins on a genomic scale. The database currently collects data on >6000 bitopic proteins from Homo sapiens, Arabidopsis thaliana, Dictyostelium discoideum, Saccharomyces cerevisiae, Escherichia coli and Methanocaldococcus jannaschii It presents the following data: (i) hierarchical classification of bitopic proteins into 15 functional classes, 689 structural superfamilies and 1404 families; (ii) 446 complexes of bitopic proteins with known three-dimensional (3D) structures classified into 129 families; (iii) computationally generated three-dimensional models of TM α-helices positioned in membranes; (iv) amino acid sequences, domain architecture, functional annotation and available experimental structures of bitopic proteins; (v) TM topology and intracellular localization, (vi) physical interactions between proteins from the database along with links to other resources. The database is freely accessible at http://membranome.org There is a variety of options for browsing, sorting, searching and retrieval of the content, including downloadable coordinate files of TM domains with calculated membrane boundaries. © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

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Tags

Protein Structure
Arabidopsis thaliana Gut eubacteria Homo sapiens Saccharomyces cerevisiae Slim mold Thermophilic methanogenic archaeabacteria
transmembrane protein

Record metadata

  • Created on: 2017-02-14
  • Curated by:
    • Shixiang Sun [2017-02-14]
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