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Database Commons - SZGR

SZGR

Citations: 72

z-index 0.00

Short name SZGR
Full name Schizophrenia Gene Resource
Description A comprehensive resource of candidate variants and genes for schizophrenia, covering genetic, epigenetic, transcriptomic, translational and many other types of evidence.
URL https://bioinfo.uth.edu/SZGR/
Year founded 2009
Last update & version 2016-06-27    v2.0
Availability Free to all users
University/Institution hosted The University of Texas Health Science Center at Houston
Address Center for Precision Health, School of Biomedical Informatics
City Houston
Province/State Texas
Country/Region United States
Contact name Zhongming Zhao
Contact email zhongming.zhao@uth.tmc.edu
Data type(s)
Major organism(s)
Keyword(s)
  • schizophrenia
Publication(s)
  • SZGR 2.0: a one-stop shop of schizophrenia candidate genes. [PMID: 27733502]

    Peilin Jia, Guangchun Han, Junfei Zhao, Pinyi Lu, Zhongming Zhao
    Nucleic acids research 2017:45(D1)
    0 Citations (Google Scholar as of 2017-02-20)

    Abstract: SZGR 2.0 is a comprehensive resource of candidate variants and genes for schizophrenia, covering genetic, epigenetic, transcriptomic, translational and many other types of evidence. By systematic review and curation of multiple lines of evidence, we included almost all variants and genes that have ever been reported to be associated with schizophrenia. In particular, we collected ∼4200 common variants reported in genome-wide association studies, ∼1000 de novo mutations discovered by large-scale sequencing of family samples, 215 genes spanning rare and replication copy number variations, 99 genes overlapping with linkage regions, 240 differentially expressed genes, 4651 differentially methylated genes and 49 genes as antipsychotic drug targets. To facilitate interpretation, we included various functional annotation data, especially brain eQTL, methylation QTL, brain expression featured in deep categorization of brain areas and developmental stages and brain-specific promoter and enhancer annotations. Furthermore, we conducted cross-study, cross-data type and integrative analyses of the multidimensional data deposited in SZGR 2.0, and made the data and results available through a user-friendly interface. In summary, SZGR 2.0 provides a one-stop shop of schizophrenia variants and genes and their function and regulation, providing an important resource in the schizophrenia and other mental disease community. SZGR 2.0 is available at https://bioinfo.uth.edu/SZGR/. © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

  • SZGR: a comprehensive schizophrenia gene resource. [PMID: 20424623]

    P Jia, J Sun, A Y Guo, Z Zhao
    Molecular psychiatry 2010:15(5)
    72 Citations (Google Scholar as of 2017-02-20)

    Abstract: Schizophrenia is a major debilitating psychiatric disorder affecting approximately 1% of the population worldwide. A tremendous amount of effort has been expended in the last two decades to identify genes influencing susceptibility to this disorder. Although there is a strong trend toward integrating data obtained from various genetic studies and their related biological information into a comprehensive resource for many complex diseases, we were unable to find such an effort for schizophrenia or for any other psychiatric disorder yet. In this study, we present Schizophrenia gene resource (SZGR), a comprehensive database with user-friendly web interface. SZGR deposits genetic data from all available sources, including those from association studies, linkage scans, gene expression, literature, gene ontology (GO) annotations, gene networks, cellular and regulatory pathways, as well as microRNAs and their target sites. Moreover, SZGR provides online tools for data browse and search, data integration, custom gene ranking and graphical presentation. This system can be easily applied to other complex diseases, especially to other psychiatric disorders. The SZGR database is available at http://bioinfo.mc.vanderbilt.edu/SZGR/.

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Tags

Disease
Homo sapiens
schizophrenia

Record metadata

  • Created on: 2017-02-20
  • Curated by:
    • Lina Ma [2017-06-15]
    • Shixiang Sun [2017-02-20]
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