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Database Commons - iPfam

iPfam

Citations: 38

z-index 4.66

Short name iPfam
Full name Catalog of Protein Family Interactions
Description The iPfam database is a catalog of protein family interactions, including domain and ligand interactions, calculated from known structures in PDB (Protein Data Bank).
URL http://ipfam.org/
Year founded 2005
Last update & version 2013-6    v1.0
Availability Free to all users
University/Institution hosted Howard Hughes Medical Institute
Address HHMI Janelia Farm Research Campus,19700 Helix Drive,Ashburn VA 20147 USA
City Ashburn
Province/State VA
Country/Region United States
Contact name Robert D. Finn
Contact email finnr@janelia.hhmi.org
Data type(s)
Major organism(s)
Keyword(s)
  • domain
  • ligand
  • protein family
Publication(s)
  • iPfam: a database of protein family and domain interactions found in the Protein Data Bank. [PMID: 24297255]

    Robert D Finn, Benjamin L Miller, Jody Clements, Alex Bateman
    Nucleic acids research 2014:42(Database issue)
    38 Citations (Google Scholar as of 2016-01-19)

    Abstract: The database iPfam, available at http://ipfam.org, catalogues Pfam domain interactions based on known 3D structures that are found in the Protein Data Bank, providing interaction data at the molecular level. Previously, the iPfam domain-domain interaction data was integrated within the Pfam database and website, but it has now been migrated to a separate database. This allows for independent development, improving data access and giving clearer separation between the protein family and interactions datasets. In addition to domain-domain interactions, iPfam has been expanded to include interaction data for domain bound small molecule ligands. Functional annotations are provided from source databases, supplemented by the incorporation of Wikipedia articles where available. iPfam (version 1.0) contains >9500 domain-domain and 15 500 domain-ligand interactions. The new website provides access to this data in a variety of ways, including interactive visualizations of the interaction data.

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200 OK2016-02-14
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200 OK2016-02-08
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200 OK2016-01-29
200 OK2016-01-27
200 OK2016-01-25
200 OK2016-01-24
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200 OK2016-01-17
200 OK2016-01-15
200 OK2016-01-13
200 OK2016-01-11
200 OK2016-01-10
200 OK2016-01-08
200 OK2016-01-06
200 OK2016-01-04

Tags

Interaction and Network Protein
domain ligand protein family

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Chunlei Yu [2016-04-17]
    • Mengwei Li [2016-02-18]
    • Lina Ma [2015-06-27]
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