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Database Commons - KBDOCK

KBDOCK

Citations: 7

z-index 1.31

Short name KBDOCK
Full name
Description KBDOCK is a 3D database system that defines and spatially clusters protein binding sites for knowledge-based protein docking.
URL http://kbdock.loria.fr/
Year founded 2011
Last update & version 2011-03-21    v1.0
Availability Free to all users
University/Institution hosted Université de Lorraine,LORIA
Address Campus Scientifique,BP 239,54506 Villers-ls-Nancy,France
City Nancy
Province/State
Country/Region France
Contact name David W. Ritchie
Contact email dave.ritchie@inria.fr
Data type(s)
Major organism(s)
Keyword(s)
  • domain-peptide interaction
  • omain-domain interaction
  • structure
Publication(s)
  • KBDOCK 2013: a spatial classification of 3D protein domain family interactions. [PMID: 24271397]

    Anisah W Ghoorah, Marie-Dominique Devignes, Malika Smaïl-Tabbone, David W Ritchie
    Nucleic acids research 2014:42(Database issue)
    7 Citations (Google Scholar as of 2016-01-20)

    Abstract: Comparing, classifying and modelling protein structural interactions can enrich our understanding of many biomolecular processes. This contribution describes Kbdock (http://kbdock.loria.fr/), a database system that combines the Pfam domain classification with coordinate data from the PDB to analyse and model 3D domain-domain interactions (DDIs). Kbdock can be queried using Pfam domain identifiers, protein sequences or 3D protein structures. For a given query domain or pair of domains, Kbdock retrieves and displays a non-redundant list of homologous DDIs or domain-peptide interactions in a common coordinate frame. Kbdock may also be used to search for and visualize interactions involving different, but structurally similar, Pfam families. Thus, structural DDI templates may be proposed even when there is little or no sequence similarity to the query domains.

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Accessibility

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200 OK2017-02-21
200 OK2017-02-17
200 OK2017-02-14
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200 OK2017-02-07
200 OK2017-02-03
200 OK2017-01-31
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200 OK2016-06-21
200 OK2016-06-17
200 OK2016-06-14
200 OK2016-06-10
200 OK2016-06-07
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200 OK2016-05-27
200 OK2016-05-24
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200 OK2016-05-17
200 OK2016-05-13
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200 OK2016-05-06
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200 OK2016-04-29
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200 OK2016-04-22
200 OK2016-04-19
200 OK2016-04-15
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200 OK2016-04-08
200 OK2016-04-05
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200 OK2016-03-29
200 OK2016-03-28
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200 OK2016-03-23
200 OK2016-03-21
200 OK2016-03-18
200 OK2016-03-16
200 OK2016-03-14
200 OK2016-03-11
200 OK2016-03-09
200 OK2016-03-07
200 OK2016-03-04
200 OK2016-03-02
200 OK2016-02-29
200 OK2016-02-26
200 OK2016-02-24
200 OK2016-02-22
200 OK2016-02-19
200 OK2016-02-17
200 OK2016-02-15
200 OK2016-02-14
200 OK2016-02-12
200 OK2016-02-10
200 OK2016-02-08
200 OK2016-02-07
200 OK2016-02-05
200 OK2016-02-03
200 OK2016-02-01
200 OK2016-01-31
200 OK2016-01-29
200 OK2016-01-27
200 OK2016-01-25
200 OK2016-01-24
200 OK2016-01-22
200 OK2016-01-20
200 OK2016-01-18
200 OK2016-01-17
200 OK2016-01-15
200 OK2016-01-13
200 OK2016-01-11
200 OK2016-01-10
200 OK2016-01-08
200 OK2016-01-06
200 OK2016-01-04

Tags

Protein
domain-peptide interaction omain-domain interaction structure

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Chunlei Yu [2016-04-17]
    • Chunlei Yu [2016-03-31]
    • Mengwei Li [2016-02-18]
    • Chunlei Yu [2015-06-29]
Stats