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Database Commons - IMG

IMG

Citations: 568

z-index 17.04

Short name IMG
Full name Integrated Microbial Genomes
Description The Integrated Microbial Genomes (IMG) data warehouse integrates genomes from all three domains of life,as well as plasmids,viruses and genome fragments.
URL https://img.jgi.doe.gov/cgi-bin/w/main.cgi
Year founded 1997
Last update & version 2015-06-26    v4.530
Availability Free to all users
University/Institution hosted Lawrence Berkeley National Laboratory
Address Biological Data Management and Technology Center,Computational Research Division Lawrence Berkeley National Laboratory,1 Cyclotron Road,Berkeley,94720 USA
City Berkeley
Province/State
Country/Region United States
Contact name Nikos C. Kyrpides
Contact email nckyrpides@lbl.gov
Data type(s)
Major organism(s)
Keyword(s)
  • genome dataset
  • metagenome dataset
Publication(s)
  • IMG 4 version of the integrated microbial genomes comparative analysis system. [PMID: 24165883]

    Victor M Markowitz, I-Min A Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Manoj Pillay, Anna Ratner, Jinghua Huang, Tanja Woyke, Marcel Huntemann, Iain Anderson, Konstantinos Billis, Neha Varghese, Konstantinos Mavromatis, Amrita Pati, Natalia N Ivanova, Nikos C Kyrpides
    Nucleic acids research 2014:42(Database issue)
    146 Citations (Google Scholar as of 2016-01-27)

    Abstract: The Integrated Microbial Genomes (IMG) data warehouse integrates genomes from all three domains of life, as well as plasmids, viruses and genome fragments. IMG provides tools for analyzing and reviewing the structural and functional annotations of genomes in a comparative context. IMG's data content and analytical capabilities have increased continuously since its first version released in 2005. Since the last report published in the 2012 NAR Database Issue, IMG's annotation and data integration pipelines have evolved while new tools have been added for recording and analyzing single cell genomes, RNA Seq and biosynthetic cluster data. Different IMG datamarts provide support for the analysis of publicly available genomes (IMG/W: http://img.jgi.doe.gov/w), expert review of genome annotations (IMG/ER: http://img.jgi.doe.gov/er) and teaching and training in the area of microbial genome analysis (IMG/EDU: http://img.jgi.doe.gov/edu).

  • IMG: the Integrated Microbial Genomes database and comparative analysis system. [PMID: 22194640]

    Victor M Markowitz, I-Min A Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Yuri Grechkin, Anna Ratner, Biju Jacob, Jinghua Huang, Peter Williams, Marcel Huntemann, Iain Anderson, Konstantinos Mavromatis, Natalia N Ivanova, Nikos C Kyrpides
    Nucleic acids research 2012:40(Database issue)
    422 Citations (Google Scholar as of 2016-01-27)

    Abstract: The Integrated Microbial Genomes (IMG) system serves as a community resource for comparative analysis of publicly available genomes in a comprehensive integrated context. IMG integrates publicly available draft and complete genomes from all three domains of life with a large number of plasmids and viruses. IMG provides tools and viewers for analyzing and reviewing the annotations of genes and genomes in a comparative context. IMG's data content and analytical capabilities have been continuously extended through regular updates since its first release in March 2005. IMG is available at http://img.jgi.doe.gov. Companion IMG systems provide support for expert review of genome annotations (IMG/ER: http://img.jgi.doe.gov/er), teaching courses and training in microbial genome analysis (IMG/EDU: http://img.jgi.doe.gov/edu) and analysis of genomes related to the Human Microbiome Project (IMG/HMP: http://www.hmpdacc-resources.org/img_hmp).

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Tags

DNA
Bacteria Viroid/virus
genome dataset metagenome dataset

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Zhang Zhang [2016-04-26]
    • Chunlei Yu [2016-04-17]
    • Chunlei Yu [2015-11-20]
    • Jian Sang [2015-07-01]
    • Chunlei Yu [2015-06-29]
Stats