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Database Commons - YeastNet

YeastNet

Citations: 17

z-index 3.31

Short name YeastNet
Full name Probabilistic Functional Gene Network of Saccharomyces cerevisiae
Description YeastNet is a probabilistic functional gene network for baker's yeast, Saccharomyces cerevisiae, which has been a major model organism for eukaryotic genetics and cell biology.
URL http://www.inetbio.org/yeastnet/
Year founded 2013
Last update & version 2014-01-01    v3.0
Availability Free to all users
University/Institution hosted Yonsei University
Address 1599-1885 50 Yonsei-ro Seodaemun-gu, Seoul, 03722, Republic of Korea
City Seoul
Province/State
Country/Region Korea Rep.
Contact name Insuk Lee
Contact email insuklee@yonsei.ac.kr
Data type(s)
Major organism(s)
Keyword(s)
  • gene network
  • yeast
Publication(s)
  • YeastNet v3: a public database of data-specific and integrated functional gene networks for Saccharomyces cerevisiae. [PMID: 24165882]

    Hanhae Kim, Junha Shin, Eiru Kim, Hyojin Kim, Sohyun Hwang, Jung Eun Shim, Insuk Lee
    Nucleic acids research 2014:42(Database issue)
    17 Citations (Google Scholar as of 2016-02-15)

    Abstract: Saccharomyces cerevisiae, i.e. baker's yeast, is a widely studied model organism in eukaryote genetics because of its simple protocols for genetic manipulation and phenotype profiling. The high abundance of publicly available data that has been generated through diverse 'omics' approaches has led to the use of yeast for many systems biology studies, including large-scale gene network modeling to better understand the molecular basis of the cellular phenotype. We have previously developed a genome-scale gene network for yeast, YeastNet v2, which has been used for various genetics and systems biology studies. Here, we present an updated version, YeastNet v3 (available at http://www.inetbio.org/yeastnet/), that significantly improves the prediction of gene-phenotype associations. The extended genome in YeastNet v3 covers up to 5818 genes (?99% of the coding genome) wired by 362 512 functional links. YeastNet v3 provides a new web interface to run the tools for network-guided hypothesis generations. YeastNet v3 also provides edge information for all data-specific networks (?2 million functional links) as well as the integrated networks. Therefore, users can construct alternative versions of the integrated network by applying their own data integration algorithm to the same data-specific links.

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Accessibility

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200 OK2018-02-27
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200 OK2018-02-16
200 OK2018-02-13
200 OK2018-02-09
200 OK2018-02-06
200 OK2018-02-02
200 OK2018-01-30
200 OK2018-01-26
200 OK2018-01-23
200 OK2018-01-19
200 OK2018-01-16
200 OK2018-01-12
200 OK2018-01-09
200 OK2018-01-05
200 OK2018-01-02
200 OK2017-12-29
200 OK2017-12-26
200 OK2017-12-22
200 OK2017-12-19
200 OK2017-12-15
200 OK2017-12-12
200 OK2017-12-08
200 OK2017-12-05
200 OK2017-12-01
200 OK2017-11-28
200 OK2017-11-24
200 OK2017-11-21
200 OK2017-11-17
200 OK2017-11-14
200 OK2017-11-10
200 OK2017-11-07
200 OK2017-11-03
200 OK2017-10-31
200 OK2017-10-27
200 OK2017-10-24
200 OK2017-10-20
200 OK2017-10-17
200 OK2017-10-13
200 OK2017-10-10
200 OK2017-10-06
200 OK2017-10-03
200 OK2017-09-29
200 OK2017-09-26
200 OK2017-09-22
200 OK2017-09-19
200 OK2017-09-15
200 OK2017-09-12
200 OK2017-09-08
200 OK2017-09-05
200 OK2017-09-01
200 OK2017-08-29
200 OK2017-08-25
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200 OK2017-08-04
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200 OK2017-03-14
200 OK2017-03-10
200 OK2017-03-07
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200 OK2017-02-28
200 OK2017-02-24
200 OK2017-02-21
200 OK2017-02-17
200 OK2017-02-14
200 OK2017-02-10
200 OK2017-02-07
200 OK2017-02-03
200 OK2017-01-31
200 OK2017-01-27
200 OK2017-01-24
200 OK2017-01-20
200 OK2017-01-17
200 OK2017-01-13
200 OK2017-01-10
200 OK2017-01-06
200 OK2017-01-03
200 OK2016-12-30
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200 OK2016-12-20
200 OK2016-12-16
200 OK2016-12-13
200 OK2016-12-09
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200 OK2016-12-02
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200 OK2016-11-18
200 OK2016-11-15
200 OK2016-11-11
200 OK2016-11-08
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200 OK2016-10-25
200 OK2016-10-21
200 OK2016-10-18
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200 OK2016-07-29
200 OK2016-07-26
200 OK2016-07-22
200 OK2016-07-19
200 OK2016-07-15
200 OK2016-07-12
200 OK2016-07-08
200 OK2016-07-05
200 OK2016-07-01
200 OK2016-06-28
200 OK2016-06-24
200 OK2016-06-21
200 OK2016-06-17
200 OK2016-06-14
200 OK2016-06-10
200 OK2016-06-07
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200 OK2016-04-15
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200 OK2016-02-26
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200 OK2016-02-19
200 OK2016-02-17
200 OK2016-02-15
200 OK2016-02-14
200 OK2016-02-12
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200 OK2016-02-08
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200 OK2016-02-05
200 OK2016-02-03
200 OK2016-02-01
200 OK2016-01-31
200 OK2016-01-29
200 OK2016-01-27
200 OK2016-01-25
200 OK2016-01-24
200 OK2016-01-22
200 OK2016-01-20
200 OK2016-01-18
200 OK2016-01-17
200 OK2016-01-15
200 OK2016-01-13
200 OK2016-01-11
200 OK2016-01-10
200 OK2016-01-08
200 OK2016-01-06
200 OK2016-01-04

Tags

DNA Interaction and Network
Saccharomyces cerevisiae
gene network yeast

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Hongyan Yin [2016-03-29]
    • Mengwei Li [2016-02-14]
    • Hongyan Yin [2015-11-25]
    • Hongyan Yin [2015-06-26]
Stats