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Database Commons - Progenetix

Progenetix

Citations: 179

z-index 6.53

Short name Progenetix
Full name
Description The Progenetix database provides an overview of copy number abnormalities in human cancer from currently 31916 array and chromosomal Comparative Genomic Hybridization (CGH) experiments.
URL http://www.progenetix.org/
Year founded 2001
Last update & version 2015-03-23    v1.0
Availability Free to all users
University/Institution hosted University of Zurich
Address CH-8057 Zürich, Switzerland
City Zürich
Province/State
Country/Region Switzerland
Contact name Michael Baudis
Contact email michael.baudis@imls.uzh.ch
Data type(s)
Major organism(s)
Keyword(s)
  • arrayMap
  • Comparative Genomic Hybridization experiment
Publication(s)
  • Progenetix: 12 years of oncogenomic data curation. [PMID: 24225322]

    Haoyang Cai, Nitin Kumar, Ni Ai, Saumya Gupta, Prisni Rath, Michael Baudis
    Nucleic acids research 2014:42(Database issue)
    9 Citations (Google Scholar as of 2016-04-28)

    Abstract: DNA copy number aberrations (CNAs) can be found in the majority of cancer genomes and are crucial for understanding the potential mechanisms underlying tumor initiation and progression. Since the first release in 2001, the Progenetix project (http://www.progenetix.org) has provided a reference resource dedicated to provide the most comprehensive collection of genome-wide CNA profiles. Reflecting the application of comparative genomic hybridization techniques to tens of thousands of cancer genomes, over the past 12 years our data curation efforts have resulted in a more than 60-fold increase in the number of cancer samples presented through Progenetix. In addition, new data exploration tools and visualization options have been added. In particular, the gene-specific CNA frequency analysis should facilitate the assignment of cancer genes to related cancer types. In addition, the new user file processing interface allows users to take advantage of the online tools, including various data representation options for proprietary data pre-publication. In this update article, we report recent improvements of the database in terms of content, user interface and online tools.

  • Progenetix.net: an online repository for molecular cytogenetic aberration data. [PMID: 11751233]

    M Baudis, M L Cleary
    Bioinformatics (Oxford, England) 2001:17(12)
    170 Citations (Google Scholar as of 2016-04-28)

    Abstract: Through sequencing projects and, more recently, array-based expression analysis experiments, a wealth of genetic data has become accessible via online resources. In contrast, few of the (molecular-) cytogenetic aberration data collected in the last decades are available in a format suitable for data mining procedures. www.progenetix.net is a new online repository for previously published chromosomal aberration data, allowing the addition of band-specific information about chromosomal imbalances to oncologic data analysis efforts. http://www.progenetix.net mbaudis@stanford.edu

Community reviews

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Accessibility

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200 OK2017-01-13
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200 OK2016-12-30
200 OK2016-12-27
200 OK2016-12-23
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200 OK2016-12-13
200 OK2016-12-09
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200 OK2016-07-29
200 OK2016-07-26
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200 OK2016-07-19
200 OK2016-07-15
200 OK2016-07-12
200 OK2016-07-08
200 OK2016-07-05
200 OK2016-07-01
200 OK2016-06-28
200 OK2016-06-24
200 OK2016-06-21
200 OK2016-06-17
200 OK2016-06-14
200 OK2016-06-10
200 OK2016-06-07
200 OK2016-06-03
200 OK2016-05-31
200 OK2016-05-27
200 OK2016-05-24
200 OK2016-05-20
200 OK2016-05-17
200 OK2016-05-13
200 OK2016-05-10
200 OK2016-05-06
200 OK2016-05-03
200 OK2016-04-29
200 OK2016-04-26
200 OK2016-04-22
200 OK2016-04-19
200 OK2016-04-15
200 OK2016-04-12
200 OK2016-04-08
200 OK2016-04-05
200 OK2016-04-01
200 OK2016-03-29
200 OK2016-03-28
200 OK2016-03-25
200 OK2016-03-23
200 OK2016-03-21
200 OK2016-03-18
200 OK2016-03-16
200 OK2016-03-14
200 OK2016-03-11
200 OK2016-03-09
200 OK2016-03-07
200 OK2016-03-04
200 OK2016-03-02
200 OK2016-02-29
200 OK2016-02-26
200 OK2016-02-24
200 OK2016-02-22
200 OK2016-02-19
200 OK2016-02-17
200 OK2016-02-15
200 OK2016-02-14
200 OK2016-02-12
200 OK2016-02-10
200 OK2016-02-08
200 OK2016-02-07
200 OK2016-02-05
200 OK2016-02-03
200 OK2016-02-01
200 OK2016-01-31
200 OK2016-01-29
200 OK2016-01-27
200 OK2016-01-25
200 OK2016-01-24
200 OK2016-01-22
200 OK2016-01-20
200 OK2016-01-18
200 OK2016-01-17
200 OK2016-01-15
200 OK2016-01-13
200 OK2016-01-11
200 OK2016-01-10
200 OK2016-01-08
200 OK2016-01-06
200 OK2016-01-04

Tags

Disease DNA
Homo sapiens
arrayMap Comparative Genomic Hybridization experiment

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Shixiang Sun [2016-03-28]
    • Shixiang Sun [2015-11-21]
    • Shixiang Sun [2015-06-28]
    • Shixiang Sun [2015-06-26]
Stats