Database Commons a catalog of biological databases

Database Commons - Factorbook

Factorbook

Citations: 61

z-index 2.20

Short name Factorbook
Full name Factorbook
Description Factorbook is a transcription factor (TF)-centric repository of all ENCODE ChIP-seq datasets on TF-binding regions,as well as the rich analysis results of these data.
URL http://www.factorbook.org/human/
Year founded 2012
Last update & version NA    v1.0
Availability Free to all users
University/Institution hosted University of Massachusetts
Address Worcester, MA 01605, USA
City Worcester
Province/State MA
Country/Region United States
Contact name Zhiping Weng
Contact email zhiping.weng@umassmed.edu
Data type(s)
Major organism(s)
Keyword(s)
  • ChIP-seq
  • TF-binding region
  • transcription factor
Publication(s)
  • Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium. [PMID: 23203885]

    Jie Wang, Jiali Zhuang, Sowmya Iyer, Xin-Ying Lin, Melissa C Greven, Bong-Hyun Kim, Jill Moore, Brian G Pierce, Xianjun Dong, Daniel Virgil, Ewan Birney, Jui-Hung Hung, Zhiping Weng
    Nucleic acids research 2013:41(Database issue)
    61 Citations (Google Scholar as of 2016-05-03)

    Abstract: The Encyclopedia of DNA Elements (ENCODE) consortium aims to identify all functional elements in the human genome including transcripts, transcriptional regulatory regions, along with their chromatin states and DNA methylation patterns. The ENCODE project generates data utilizing a variety of techniques that can enrich for regulatory regions, such as chromatin immunoprecipitation (ChIP), micrococcal nuclease (MNase) digestion and DNase I digestion, followed by deeply sequencing the resulting DNA. As part of the ENCODE project, we have developed a Web-accessible repository accessible at http://factorbook.org. In Wiki format, factorbook is a transcription factor (TF)-centric repository of all ENCODE ChIP-seq datasets on TF-binding regions, as well as the rich analysis results of these data. In the first release, factorbook contains 457 ChIP-seq datasets on 119 TFs in a number of human cell lines, the average profiles of histone modifications and nucleosome positioning around the TF-binding regions, sequence motifs enriched in the regions and the distance and orientation preferences between motif sites.

Community reviews

Data
quality & quantity
Content organization & presentation
System accessibility & reliability
Reviewed by

Word cloud (embeddable)

Database Commons - Word Cloud

Accessibility

Rate of accessibility:
HTTP status codeDate requested
404 Failed2018-11-20
404 Failed2018-11-16
404 Failed2018-11-13
404 Failed2018-11-09
404 Failed2018-11-06
404 Failed2018-11-02
404 Failed2018-10-30
404 Failed2018-10-26
404 Failed2018-10-23
404 Failed2018-10-19
404 Failed2018-10-16
404 Failed2018-10-12
404 Failed2018-10-09
404 Failed2018-10-05
404 Failed2018-10-02
404 Failed2018-09-28
404 Failed2018-09-25
404 Failed2018-09-21
404 Failed2018-09-18
404 Failed2018-09-14
404 Failed2018-09-11
404 Failed2018-09-07
404 Failed2018-09-04
404 Failed2018-08-31
404 Failed2018-08-28
404 Failed2018-08-24
404 Failed2018-08-21
404 Failed2018-08-17
404 Failed2018-08-14
404 Failed2018-08-10
404 Failed2018-08-07
404 Failed2018-08-03
404 Failed2018-07-31
404 Failed2018-07-27
404 Failed2018-07-24
404 Failed2018-07-20
404 Failed2018-07-17
404 Failed2018-07-13
404 Failed2018-07-10
404 Failed2018-07-06
404 Failed2018-07-03
404 Failed2018-06-29
404 Failed2018-06-26
404 Failed2018-06-22
404 Failed2018-06-19
404 Failed2018-06-15
404 Failed2018-06-12
404 Failed2018-06-08
404 Failed2018-06-05
404 Failed2018-06-01
404 Failed2018-05-29
404 Failed2018-05-25
404 Failed2018-05-22
404 Failed2018-05-18
404 Failed2018-05-15
404 Failed2018-05-11
404 Failed2018-05-08
404 Failed2018-05-04
404 Failed2018-05-01
404 Failed2018-04-27
404 Failed2018-04-24
404 Failed2018-04-20
404 Failed2018-04-17
404 Failed2018-04-13
404 Failed2018-04-10
404 Failed2018-04-06
404 Failed2018-04-03
404 Failed2018-02-27
404 Failed2018-02-23
404 Failed2018-02-20
404 Failed2018-02-16
404 Failed2018-02-13
404 Failed2018-02-09
404 Failed2018-02-06
404 Failed2018-02-02
404 Failed2018-01-30
404 Failed2018-01-26
404 Failed2018-01-23
404 Failed2018-01-19
404 Failed2018-01-16
404 Failed2018-01-12
404 Failed2018-01-09
404 Failed2018-01-05
404 Failed2018-01-02
404 Failed2017-12-29
404 Failed2017-12-26
404 Failed2017-12-22
404 Failed2017-12-19
404 Failed2017-12-15
404 Failed2017-12-12
404 Failed2017-12-08
404 Failed2017-12-05
404 Failed2017-12-01
404 Failed2017-11-28
404 Failed2017-11-24
404 Failed2017-11-21
404 Failed2017-11-17
404 Failed2017-11-14
404 Failed2017-11-10
404 Failed2017-11-07
404 Failed2017-11-03
404 Failed2017-10-31
404 Failed2017-10-27
404 Failed2017-10-24
404 Failed2017-10-20
404 Failed2017-10-17
404 Failed2017-10-13
404 Failed2017-10-10
404 Failed2017-10-06
404 Failed2017-10-03
404 Failed2017-09-29
404 Failed2017-09-26
404 Failed2017-09-22
404 Failed2017-09-19
404 Failed2017-09-15
404 Failed2017-09-12
404 Failed2017-09-08
404 Failed2017-09-05
404 Failed2017-09-01
404 Failed2017-08-29
404 Failed2017-08-25
404 Failed2017-08-22
404 Failed2017-08-18
404 Failed2017-08-15
404 Failed2017-08-11
404 Failed2017-08-08
404 Failed2017-08-04
404 Failed2017-08-01
404 Failed2017-07-28
404 Failed2017-07-25
404 Failed2017-07-21
404 Failed2017-07-18
404 Failed2017-07-14
404 Failed2017-07-04
404 Failed2017-06-30
404 Failed2017-06-27
404 Failed2017-06-23
404 Failed2017-06-20
404 Failed2017-06-16
404 Failed2017-06-13
404 Failed2017-06-09
404 Failed2017-06-06
404 Failed2017-06-02
404 Failed2017-05-30
404 Failed2017-05-26
404 Failed2017-05-23
404 Failed2017-05-19
404 Failed2017-05-16
404 Failed2017-05-12
404 Failed2017-05-09
404 Failed2017-05-05
404 Failed2017-05-02
404 Failed2017-04-28
404 Failed2017-04-25
404 Failed2017-04-21
404 Failed2017-04-18
404 Failed2017-04-14
404 Failed2017-04-11
404 Failed2017-04-07
404 Failed2017-04-04
404 Failed2017-03-31
404 Failed2017-03-28
404 Failed2017-03-24
404 Failed2017-03-21
404 Failed2017-03-17
404 Failed2017-03-14
404 Failed2017-03-10
404 Failed2017-03-07
404 Failed2017-03-03
404 Failed2017-02-28
404 Failed2017-02-24
404 Failed2017-02-21
404 Failed2017-02-17
404 Failed2017-02-14
404 Failed2017-02-10
404 Failed2017-02-07
404 Failed2017-02-03
404 Failed2017-01-31
404 Failed2017-01-27
404 Failed2017-01-24
404 Failed2017-01-20
404 Failed2017-01-17
404 Failed2017-01-13
404 Failed2017-01-10
404 Failed2017-01-06
404 Failed2017-01-03
404 Failed2016-12-30
404 Failed2016-12-27
404 Failed2016-12-23
404 Failed2016-12-20
404 Failed2016-12-16
404 Failed2016-12-13
404 Failed2016-12-09
404 Failed2016-12-06
404 Failed2016-12-02
404 Failed2016-11-29
404 Failed2016-11-25
404 Failed2016-11-22
404 Failed2016-11-18
404 Failed2016-11-15
404 Failed2016-11-11
404 Failed2016-11-08
404 Failed2016-11-04
404 Failed2016-11-01
404 Failed2016-10-28
404 Failed2016-10-25
404 Failed2016-10-21
404 Failed2016-10-18
404 Failed2016-10-14
404 Failed2016-10-11
404 Failed2016-10-07
404 Failed2016-10-04
404 Failed2016-09-30
404 Failed2016-09-27
404 Failed2016-09-23
404 Failed2016-09-20
404 Failed2016-09-16
404 Failed2016-09-13
404 Failed2016-09-09
404 Failed2016-09-06
404 Failed2016-09-02
404 Failed2016-08-30
404 Failed2016-08-26
404 Failed2016-08-23
404 Failed2016-08-19
404 Failed2016-08-16
404 Failed2016-08-12
404 Failed2016-08-09
404 Failed2016-08-05
404 Failed2016-08-02
404 Failed2016-07-29
404 Failed2016-07-26
404 Failed2016-07-22
404 Failed2016-07-19
404 Failed2016-07-15
404 Failed2016-07-12
404 Failed2016-07-08
404 Failed2016-07-05
404 Failed2016-07-01
404 Failed2016-06-28
404 Failed2016-06-24
404 Failed2016-06-21
404 Failed2016-06-17
404 Failed2016-06-14
404 Failed2016-06-10
404 Failed2016-06-07
404 Failed2016-06-03
404 Failed2016-05-31
404 Failed2016-05-27
404 Failed2016-05-24
404 Failed2016-05-20
404 Failed2016-05-17
200 OK2016-05-13
200 OK2016-05-10
200 OK2016-05-06
200 OK2016-05-03
200 OK2016-04-29
200 OK2016-04-26
200 OK2016-04-22
200 OK2016-04-19
200 OK2016-04-15
200 OK2016-04-12
200 OK2016-04-08
200 OK2016-04-05
200 OK2016-04-01
200 OK2016-03-29
200 OK2016-03-28
200 OK2016-03-25
200 OK2016-03-23
200 OK2016-03-21
200 OK2016-03-18
200 OK2016-03-16
200 OK2016-03-14
200 OK2016-03-11
200 OK2016-03-09
200 OK2016-03-07
200 OK2016-03-04
200 OK2016-03-02
200 OK2016-02-29
200 OK2016-02-26
200 OK2016-02-24
200 OK2016-02-22
200 OK2016-02-19
200 OK2016-02-17
200 OK2016-02-15
200 OK2016-02-14
200 OK2016-02-12
200 OK2016-02-10
200 OK2016-02-08
200 OK2016-02-07
200 OK2016-02-05
200 OK2016-02-03
200 OK2016-02-01
200 OK2016-01-31
200 OK2016-01-29
200 OK2016-01-27
200 OK2016-01-25
200 OK2016-01-24
200 OK2016-01-22
200 OK2016-01-20
200 OK2016-01-18
200 OK2016-01-17
200 OK2016-01-15
200 OK2016-01-13
200 OK2016-01-11
200 OK2016-01-10
200 OK2016-01-08
200 OK2016-01-06
200 OK2016-01-04

Tags

DNA Interaction and Network
Homo sapiens
ChIP-seq TF-binding region transcription factor

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Lina Ma [2016-09-23]
    • Jian Sang [2016-03-28]
    • Mengwei Li [2016-02-19]
    • Jian Sang [2015-06-27]
Stats