Database Commons a catalog of biological databases

Database Commons - CFGP

CFGP

Citations: 102

z-index 4.79

Short name CFGP
Full name Comparative Fungal Genomics Platform
Description CFGP is a versatile web-based platform for supporting comparative and evolutionary genomics of fungi and Oomycetes.
URL http://cfgp.riceblast.snu.ac.kr/main.php
Year founded 2007
Last update & version 5/25/2015    v2.0
Availability Free to all users
University/Institution hosted Seoul National University
Address Seoul 151-742,Korea
City Seoul
Province/State
Country/Region Korea Rep.
Contact name Yong-Hwan Lee
Contact email yonglee@snu.ac.kr
Data type(s)
Major organism(s)
Keyword(s)
  • fungal genomics
Publication(s)
  • CFGP 2.0: a versatile web-based platform for supporting comparative and evolutionary genomics of fungi and Oomycetes. [PMID: 23193288]

    Jaeyoung Choi, Kyeongchae Cheong, Kyongyong Jung, Jongbum Jeon, Gir-Won Lee, Seogchan Kang, Sangsoo Kim, Yin-Won Lee, Yong-Hwan Lee
    Nucleic acids research 2013:41(Database issue)
    27 Citations (Google Scholar as of 2016-01-27)

    Abstract: In 2007, Comparative Fungal Genomics Platform (CFGP; http://cfgp.snu.ac.kr/) was publicly open with 65 genomes corresponding to 58 fungal and Oomycete species. The CFGP provided six bioinformatics tools, including a novel tool entitled BLASTMatrix that enables search homologous genes to queries in multiple species simultaneously. CFGP also introduced Favorite, a personalized virtual space for data storage and analysis with these six tools. Since 2007, CFGP has grown to archive 283 genomes corresponding to 152 fungal and Oomycete species as well as 201 genomes that correspond to seven bacteria, 39 plants and 105 animals. In addition, the number of tools in Favorite increased to 27. The Taxonomy Browser of CFGP 2.0 allows users to interactively navigate through a large number of genomes according to their taxonomic positions. The user interface of BLASTMatrix was also improved to facilitate subsequent analyses of retrieved data. A newly developed genome browser, Seoul National University Genome Browser (SNUGB), was integrated into CFGP 2.0 to support graphical presentation of diverse genomic contexts. Based on the standardized genome warehouse of CFGP 2.0, several systematic platforms designed to support studies on selected gene families have been developed. Most of them are connected through Favorite to allow of sharing data across the platforms.

  • CFGP: a web-based, comparative fungal genomics platform. [PMID: 17947331]

    Jongsun Park, Bongsoo Park, Kyongyong Jung, Suwang Jang, Kwangyul Yu, Jaeyoung Choi, Sunghyung Kong, Jaejin Park, Seryun Kim, Hyojeong Kim, Soonok Kim, Jihyun F Kim, Jaime E Blair, Kwangwon Lee, Seogchan Kang, Yong-Hwan Lee
    Nucleic acids research 2008:36(Database issue)
    75 Citations (Google Scholar as of 2016-01-27)

    Abstract: Since the completion of the Saccharomyces cerevisiae genome sequencing project in 1996, the genomes of over 80 fungal species have been sequenced or are currently being sequenced. Resulting data provide opportunities for studying and comparing fungal biology and evolution at the genome level. To support such studies, the Comparative Fungal Genomics Platform (CFGP; http://cfgp.snu.ac.kr), a web-based multifunctional informatics workbench, was developed. The CFGP comprises three layers, including the basal layer, middleware and the user interface. The data warehouse in the basal layer contains standardized genome sequences of 65 fungal species. The middleware processes queries via six analysis tools, including BLAST, ClustalW, InterProScan, SignalP 3.0, PSORT II and a newly developed tool named BLASTMatrix. The BLASTMatrix permits the identification and visualization of genes homologous to a query across multiple species. The Data-driven User Interface (DUI) of the CFGP was built on a new concept of pre-collecting data and post-executing analysis instead of the 'fill-in-the-form-and-press-SUBMIT' user interfaces utilized by most bioinformatics sites. A tool termed Favorite, which supports the management of encapsulated sequence data and provides a personalized data repository to users, is another novel feature in the DUI.

Community reviews

Data
quality & quantity
Content organization & presentation
System accessibility & reliability
Reviewed by

Word cloud (embeddable)

Database Commons - Word Cloud

Accessibility

Rate of accessibility:
HTTP status codeDate requested
-1 Failed2018-11-20
-1 Failed2018-11-16
-1 Failed2018-11-13
-1 Failed2018-11-09
-1 Failed2018-11-06
-1 Failed2018-11-02
-1 Failed2018-10-30
200 OK2018-10-26
-1 Failed2018-10-23
-1 Failed2018-10-19
-1 Failed2018-10-16
-1 Failed2018-10-12
-1 Failed2018-10-09
-1 Failed2018-10-05
-1 Failed2018-10-02
200 OK2018-09-28
-1 Failed2018-09-25
-1 Failed2018-09-21
-1 Failed2018-09-18
-1 Failed2018-09-14
-1 Failed2018-09-11
-1 Failed2018-09-07
-1 Failed2018-09-04
-1 Failed2018-08-31
-1 Failed2018-08-28
-1 Failed2018-08-24
-1 Failed2018-08-21
-1 Failed2018-08-17
-1 Failed2018-08-14
-1 Failed2018-08-10
-1 Failed2018-08-07
-1 Failed2018-08-03
-1 Failed2018-07-31
-1 Failed2018-07-27
-1 Failed2018-07-24
-1 Failed2018-07-20
-1 Failed2018-07-17
-1 Failed2018-07-13
-1 Failed2018-07-10
-1 Failed2018-07-06
-1 Failed2018-07-03
-1 Failed2018-06-29
-1 Failed2018-06-26
-1 Failed2018-06-22
-1 Failed2018-06-19
-1 Failed2018-06-15
-1 Failed2018-06-12
-1 Failed2018-06-08
-1 Failed2018-06-05
-1 Failed2018-06-01
-1 Failed2018-05-29
-1 Failed2018-05-25
-1 Failed2018-05-22
200 OK2018-05-18
-1 Failed2018-05-15
-1 Failed2018-05-11
200 OK2018-05-08
-1 Failed2018-05-04
200 OK2018-05-01
-1 Failed2018-04-27
-1 Failed2018-04-24
-1 Failed2018-04-20
-1 Failed2018-04-17
-1 Failed2018-04-13
-1 Failed2018-04-10
-1 Failed2018-04-06
-1 Failed2018-04-03
-1 Failed2018-02-27
-1 Failed2018-02-23
-1 Failed2018-02-20
-1 Failed2018-02-16
-1 Failed2018-02-13
-1 Failed2018-02-09
-1 Failed2018-02-06
-1 Failed2018-02-02
200 OK2018-01-30
-1 Failed2018-01-26
-1 Failed2018-01-23
-1 Failed2018-01-19
-1 Failed2018-01-16
-1 Failed2018-01-12
-1 Failed2018-01-09
-1 Failed2018-01-05
-1 Failed2018-01-02
-1 Failed2017-12-29
-1 Failed2017-12-26
-1 Failed2017-12-22
-1 Failed2017-12-19
-1 Failed2017-12-15
-1 Failed2017-12-12
-1 Failed2017-12-08
-1 Failed2017-12-05
-1 Failed2017-12-01
-1 Failed2017-11-28
-1 Failed2017-11-24
-1 Failed2017-11-21
200 OK2017-11-17
-1 Failed2017-11-14
-1 Failed2017-11-10
-1 Failed2017-11-07
-1 Failed2017-11-03
-1 Failed2017-10-31
-1 Failed2017-10-27
-1 Failed2017-10-24
-1 Failed2017-10-20
-1 Failed2017-10-17
-1 Failed2017-10-13
-1 Failed2017-10-10
-1 Failed2017-10-06
-1 Failed2017-10-03
-1 Failed2017-09-29
200 OK2017-09-26
-1 Failed2017-09-22
-1 Failed2017-09-19
-1 Failed2017-09-15
-1 Failed2017-09-12
-1 Failed2017-09-08
-1 Failed2017-09-05
-1 Failed2017-09-01
-1 Failed2017-08-29
-1 Failed2017-08-25
200 OK2017-08-22
-1 Failed2017-08-18
-1 Failed2017-08-15
-1 Failed2017-08-11
-1 Failed2017-08-08
-1 Failed2017-08-04
200 OK2017-08-01
-1 Failed2017-07-28
-1 Failed2017-07-25
-1 Failed2017-07-21
-1 Failed2017-07-18
-1 Failed2017-07-14
-1 Failed2017-07-04
-1 Failed2017-06-30
-1 Failed2017-06-27
-1 Failed2017-06-23
-1 Failed2017-06-20
-1 Failed2017-06-16
-1 Failed2017-06-13
-1 Failed2017-06-09
-1 Failed2017-06-06
-1 Failed2017-06-02
-1 Failed2017-05-30
-1 Failed2017-05-26
200 OK2017-05-23
-1 Failed2017-05-19
-1 Failed2017-05-16
-1 Failed2017-05-12
-1 Failed2017-05-09
-1 Failed2017-05-05
-1 Failed2017-05-02
-1 Failed2017-04-28
-1 Failed2017-04-25
-1 Failed2017-04-21
-1 Failed2017-04-18
-1 Failed2017-04-14
200 OK2017-04-11
200 OK2017-04-07
200 OK2017-04-04
200 OK2017-03-31
200 OK2017-03-28
200 OK2017-03-24
200 OK2017-03-21
200 OK2017-03-17
200 OK2017-03-14
200 OK2017-03-10
200 OK2017-03-07
200 OK2017-03-03
200 OK2017-02-28
200 OK2017-02-24
200 OK2017-02-21
200 OK2017-02-17
200 OK2017-02-14
200 OK2017-02-10
200 OK2017-02-07
200 OK2017-02-03
200 OK2017-01-31
200 OK2017-01-27
200 OK2017-01-24
200 OK2017-01-20
200 OK2017-01-17
200 OK2017-01-13
200 OK2017-01-10
200 OK2017-01-06
200 OK2017-01-03
200 OK2016-12-30
200 OK2016-12-27
200 OK2016-12-23
200 OK2016-12-20
200 OK2016-12-16
200 OK2016-12-13
200 OK2016-12-09
200 OK2016-12-06
200 OK2016-12-02
200 OK2016-11-29
200 OK2016-11-25
200 OK2016-11-22
200 OK2016-11-18
200 OK2016-11-15
200 OK2016-11-11
200 OK2016-11-08
200 OK2016-11-04
200 OK2016-11-01
200 OK2016-10-28
200 OK2016-10-25
200 OK2016-10-21
200 OK2016-10-18
200 OK2016-10-14
200 OK2016-10-11
200 OK2016-10-07
200 OK2016-10-04
200 OK2016-09-30
200 OK2016-09-27
200 OK2016-09-23
200 OK2016-09-20
200 OK2016-09-16
200 OK2016-09-13
200 OK2016-09-09
200 OK2016-09-06
200 OK2016-09-02
200 OK2016-08-30
200 OK2016-08-26
200 OK2016-08-23
200 OK2016-08-19
200 OK2016-08-16
200 OK2016-08-12
200 OK2016-08-09
200 OK2016-08-05
200 OK2016-08-02
200 OK2016-07-29
200 OK2016-07-26
200 OK2016-07-22
200 OK2016-07-19
200 OK2016-07-15
200 OK2016-07-12
200 OK2016-07-08
200 OK2016-07-05
200 OK2016-07-01
200 OK2016-06-28
200 OK2016-06-24
200 OK2016-06-21
200 OK2016-06-17
200 OK2016-06-14
200 OK2016-06-10
200 OK2016-06-07
200 OK2016-06-03
200 OK2016-05-31
200 OK2016-05-27
200 OK2016-05-24
200 OK2016-05-20
200 OK2016-05-17
200 OK2016-05-13
200 OK2016-05-10
200 OK2016-05-06
200 OK2016-05-03
200 OK2016-04-29
200 OK2016-04-26
200 OK2016-04-22
200 OK2016-04-19
200 OK2016-04-15
200 OK2016-04-12
200 OK2016-04-08
200 OK2016-04-05
200 OK2016-04-01
200 OK2016-03-29
200 OK2016-03-28
200 OK2016-03-25
200 OK2016-03-23
200 OK2016-03-21
200 OK2016-03-18
200 OK2016-03-16
200 OK2016-03-14
200 OK2016-03-11
200 OK2016-03-09
200 OK2016-03-07
200 OK2016-03-04
200 OK2016-03-02
200 OK2016-02-29
200 OK2016-02-26
200 OK2016-02-24
200 OK2016-02-22
200 OK2016-02-19
200 OK2016-02-17
200 OK2016-02-15
200 OK2016-02-14
200 OK2016-02-12
200 OK2016-02-10
-1 Failed2016-02-08
-1 Failed2016-02-07
-1 Failed2016-02-05
-1 Failed2016-02-03
-1 Failed2016-02-01
-1 Failed2016-01-31
-1 Failed2016-01-29
-1 Failed2016-01-27
-1 Failed2016-01-25
-1 Failed2016-01-24
-1 Failed2016-01-22
-1 Failed2016-01-20
-1 Failed2016-01-18
-1 Failed2016-01-17
-1 Failed2016-01-15
-1 Failed2016-01-13
-1 Failed2016-01-11
-1 Failed2016-01-10
-1 Failed2016-01-08
200 OK2016-01-06
200 OK2016-01-04

Tags

DNA Protein
Fungus
fungal genomics

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Mengwei Li [2016-03-31]
    • Mengwei Li [2015-12-01]
    • Mengwei Li [2015-06-27]
Stats