Database Commons a catalog of biological databases

Database Commons - QTLdb

QTLdb

Citations: 143

z-index 16.59

Short name QTLdb
Full name Animal QTL database
Description QTLdb is an improved database tool for livestock animal QTL/association data dissemination in the post-genome era.
URL http://www.animalgenome.org/QTLdb
Year founded 2006
Last update & version 2015-12-29    v28
Availability Free to all users
University/Institution hosted Iowa State University
Address 2255 Kildee Hall, Ames, IA 50011, USA
City Ames
Province/State IA
Country/Region United States
Contact name Zhi-Liang Hu
Contact email zhu@iastate.edu
Data type(s)
Major organism(s)
Keyword(s)
  • quantitative trait loci
  • single-nucleotide polymorphism
Publication(s)
  • Developmental progress and current status of the Animal QTLdb. [PMID: 26602686]

    Zhi-Liang Hu, Carissa A Park, James M Reecy
    Nucleic acids research 2016:44(D1)
    1 Citations (Google Scholar as of 2016-01-29)

    Abstract: The Animal QTL Database (QTLdb; http://www.animalgenome.org/QTLdb) has undergone dramatic growth in recent years in terms of new data curated, data downloads and new functions and tools. We have focused our development efforts to cope with challenges arising from rapid growth of newly published data and end users' data demands, and to optimize data retrieval and analysis to facilitate users' research. Evidenced by the 27 releases in the past 11 years, the growth of the QTLdb has been phenomenal. Here we report our recent progress which is highlighted by addition of one new species, four new data types, four new user tools, a new API tool set, numerous new functions and capabilities added to the curator tool set, expansion of our data alliance partners and more than 20 other improvements. In this paper we present a summary of our progress to date and an outlook regarding future directions. © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

  • Animal QTLdb: an improved database tool for livestock animal QTL/association data dissemination in the post-genome era. [PMID: 23180796]

    Zhi-Liang Hu, Carissa A Park, Xiao-Lin Wu, James M Reecy
    Nucleic acids research 2013:41(Database issue)
    142 Citations (Google Scholar as of 2016-01-29)

    Abstract: The Animal QTL database (QTLdb; http://www.animalgenome.org/QTLdb) is designed to house all publicly available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. An earlier version was published in the Nucleic Acids Research Database issue in 2007. Since then, we have continued our efforts to develop new and improved database tools to allow more data types, parameters and functions. Our efforts have transformed the Animal QTLdb into a tool that actively serves the research community as a quality data repository and more importantly, a provider of easily accessible tools and functions to disseminate QTL and gene association information. The QTLdb has been heavily used by the livestock genomics community since its first public release in 2004. To date, there are 5920 cattle, 3442 chicken, 7451 pigs, 753 sheep and 88 rainbow trout data points in the database, and at least 290 publications that cite use of the database. The rapid advancement in genomic studies of cattle, chicken, pigs, sheep and other livestock animals has presented us with challenges, as well as opportunities for the QTLdb to meet the evolving needs of the research community. Here, we report our progress over the recent years and highlight new functions and services available to the general public.

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Accessibility

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200 OK2017-02-17
200 OK2017-02-14
200 OK2017-02-10
200 OK2017-02-07
200 OK2017-02-03
200 OK2017-01-31
200 OK2017-01-27
200 OK2017-01-24
200 OK2017-01-20
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200 OK2017-01-03
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200 OK2016-12-13
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-1 Failed2016-12-06
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200 OK2016-11-29
200 OK2016-11-25
200 OK2016-11-22
200 OK2016-11-18
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200 OK2016-11-11
200 OK2016-11-08
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200 OK2016-08-16
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200 OK2016-07-29
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200 OK2016-07-19
200 OK2016-07-15
200 OK2016-07-12
200 OK2016-07-08
200 OK2016-07-05
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200 OK2016-06-28
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200 OK2016-06-17
200 OK2016-06-14
200 OK2016-06-10
200 OK2016-06-07
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200 OK2016-05-31
200 OK2016-05-27
200 OK2016-05-24
200 OK2016-05-20
200 OK2016-05-17
200 OK2016-05-13
200 OK2016-05-10
200 OK2016-05-06
200 OK2016-05-03
200 OK2016-04-29
200 OK2016-04-26
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200 OK2016-04-15
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200 OK2016-04-08
200 OK2016-04-05
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200 OK2016-03-29
200 OK2016-03-28
200 OK2016-03-25
200 OK2016-03-23
200 OK2016-03-21
200 OK2016-03-18
200 OK2016-03-16
200 OK2016-03-14
200 OK2016-03-11
200 OK2016-03-09
200 OK2016-03-07
200 OK2016-03-04
200 OK2016-03-02
200 OK2016-02-29
200 OK2016-02-26
200 OK2016-02-24
200 OK2016-02-22
200 OK2016-02-19
200 OK2016-02-17
200 OK2016-02-15
200 OK2016-02-14
200 OK2016-02-12
200 OK2016-02-10
200 OK2016-02-08
200 OK2016-02-07
200 OK2016-02-05
200 OK2016-02-03
200 OK2016-02-01
200 OK2016-01-31
200 OK2016-01-29
200 OK2016-01-27
200 OK2016-01-25
200 OK2016-01-24
200 OK2016-01-22
200 OK2016-01-20
200 OK2016-01-18
200 OK2016-01-17
200 OK2016-01-15
200 OK2016-01-13
200 OK2016-01-11
200 OK2016-01-10
200 OK2016-01-08
200 OK2016-01-06
200 OK2016-01-04

Tags

DNA
Bos taurus Gallus gallus Sus scrofa
quantitative trait loci single-nucleotide polymorphism

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Lin Xia [2016-03-28]
    • Lin Liu [2016-01-29]
    • Lin Liu [2016-01-12]
    • Lin Liu [2016-01-03]
    • Lin Liu [2016-01-02]
    • Lin Xia [2015-11-20]
    • Mengwei Li [2015-06-26]
Stats