Database Commons a catalog of biological databases

Database Commons - dbVar

dbVar

Citations: 41

z-index 2.87

Short name dbVar
Full name Database of Genomic Structural Variation
Description dbVar is NCBI's database of genomic structural variation – it contains insertions, deletions, duplications, inversions, multinucleotide substitutions, mobile element insertions, translocations, and complex chromosomal rearrangements.
URL http://www.ncbi.nlm.nih.gov/dbvar
Year founded 2012
Last update & version NA    v1.0
Availability Free to all users
University/Institution hosted National Center for Biotechnology Information
Address Bethesda,20894-6511 MD,USA
City Bethesda
Province/State MD
Country/Region United States
Contact name Deanna M. Church
Contact email church@ncbi.nlm.nih.gov
Data type(s)
Major organism(s)
Keyword(s)
  • chromosomal rearrangement
  • deletion
  • duplication
  • genomic structural variation
  • insertion
  • inversion
  • mobile element insertion
  • translocation
Publication(s)
  • DbVar and DGVa: public archives for genomic structural variation. [PMID: 23193291]

    Ilkka Lappalainen, John Lopez, Lisa Skipper, Timothy Hefferon, J Dylan Spalding, John Garner, Chao Chen, Michael Maguire, Matt Corbett, George Zhou, Justin Paschall, Victor Ananiev, Paul Flicek, Deanna M Church
    Nucleic acids research 2013:41(Database issue)
    41 Citations (Google Scholar as of 2016-02-27)

    Abstract: Much has changed in the last two years at DGVa (http://www.ebi.ac.uk/dgva) and dbVar (http://www.ncbi.nlm.nih.gov/dbvar). We are now processing direct submissions rather than only curating data from the literature and our joint study catalog includes data from over 100 studies in 11 organisms. Studies from human dominate with data from control and case populations, tumor samples as well as three large curated studies derived from multiple sources. During the processing of these data, we have made improvements to our data model, submission process and data representation. Additionally, we have made significant improvements in providing access to these data via web and FTP interfaces.

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Tags

DNA
Bos taurus Drosophila melanogaster Homo sapiens Mus musculus Sorghum bicolor Sus scrofa
chromosomal rearrangement deletion duplication genomic structural variation insertion inversion mobile element insertion translocation

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Lina Ma [2016-04-13]
    • Jian Sang [2016-04-04]
    • Mengwei Li [2016-02-13]
    • Lina Ma [2015-12-29]
    • Jian Sang [2015-12-06]
    • Jian Sang [2015-06-26]
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