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Database Commons - CircaDB

CircaDB

Citations: 61

z-index 4.51

Short name CircaDB
Full name Circadian Database
Description CircaDB is a new database of circadian transcriptional profiles from time course expression experiments from mice and humans.
URL http://circadb.org/
Year founded 2012
Last update & version 2/12/2015    v1.0
Availability Free to all users
University/Institution hosted University of Pennsylvania
Address 3400 Civic Center Boulevard, Building 421, Philadelphia, PA 19104, USA
City Philadelphia
Province/State PA
Country/Region United States
Contact name Angel Pizarro
Contact email angel@upenn.edu
Data type(s)
Major organism(s)
Keyword(s)
  • circadian transcriptional profile
Publication(s)
  • CircaDB: a database of mammalian circadian gene expression profiles. [PMID: 23180795]

    Angel Pizarro, Katharina Hayer, Nicholas F Lahens, John B Hogenesch
    Nucleic acids research 2013:41(Database issue)
    61 Citations (Google Scholar as of 2016-02-28)

    Abstract: CircaDB (http://circadb.org) is a new database of circadian transcriptional profiles from time course expression experiments from mice and humans. Each transcript's expression was evaluated by three separate algorithms, JTK_Cycle, Lomb Scargle and DeLichtenberg. Users can query the gene annotations using simple and powerful full text search terms, restrict results to specific data sets and provide probability thresholds for each algorithm. Visualizations of the data are intuitive charts that convey profile information more effectively than a table of probabilities. The CircaDB web application is open source and available at http://github.com/itmat/circadb.

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Tags

Expression
Homo sapiens Mus musculus
circadian transcriptional profile

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Mengwei Li [2016-03-31]
    • Mengwei Li [2015-12-02]
    • Mengwei Li [2015-06-27]
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