Database Commons a catalog of biological databases

Database Commons - Clone DB

Clone DB

Citations: 6

z-index 0.42

Short name Clone DB
Full name
Description Clone DB is a database that integrates information about clones and libraries,including sequence data,map positions and distributor information. It replaces the former NCBI Clone Registry.
URL http://www.ncbi.nlm.nih.gov/clone/
Year founded
Last update & version NA    v1.0
Availability Free to all users
University/Institution hosted National Center for Biotechnology Information
Address Bethesda,MD 20892,USA
City Bethesda
Province/State MD
Country/Region United States
Contact name Valerie A. Schneider
Contact email schneiva@ncbi.nlm.nih.gov
Data type(s)
Major organism(s)
Keyword(s)
  • DNA clone
Publication(s)
  • Clone DB: an integrated NCBI resource for clone-associated data. [PMID: 23193260]

    Valerie A Schneider, Hsiu-Chuan Chen, Cliff Clausen, Peter A Meric, Zhigang Zhou, Nathan Bouk, Nora Husain, Donna R Maglott, Deanna M Church
    Nucleic acids research 2013:41(Database issue)
    6 Citations (Google Scholar as of 2016-02-29)

    Abstract: The National Center for Biotechnology Information (NCBI) Clone DB (http://www.ncbi.nlm.nih.gov/clone/) is an integrated resource providing information about and facilitating access to clones, which serve as valuable research reagents in many fields, including genome sequencing and variation analysis. Clone DB represents an expansion and replacement of the former NCBI Clone Registry and has records for genomic and cell-based libraries and clones representing more than 100 different eukaryotic taxa. Records provide details of library construction, associated sequences, map positions and information about resource distribution. Clone DB is indexed in the NCBI Entrez system and can be queried by fields that include organism, clone name, gene name and sequence identifier. Whenever possible, genomic clones are mapped to reference assemblies and their map positions provided in clone records. Clones mapping to specific genomic regions can also be searched for using the NCBI Clone Finder tool, which accepts queries based on sequence coordinates or features such as gene or transcript names. Clone DB makes reports of library, clone and placement data on its FTP site available for download. With Clone DB, users now have available to them a centralized resource that provides them with the tools they will need to make use of these important research reagents.

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Tags

DNA
DNA clone

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Mengwei Li [2016-04-12]
    • Mengwei Li [2016-03-31]
    • Mengwei Li [2015-12-03]
    • Mengwei Li [2015-06-27]
Stats