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Database Commons - LUCApedia

LUCApedia

Citations: 10

z-index 1.26

Short name LUCApedia
Full name Last Universal Common Ancestor
Description LUCApedia is a unified framework containing multiple datasets related to the Last Universal Common Ancestor (LUCA) and its predecessors.
URL http://eeb.princeton.edu/lucapedia/
Year founded 2012
Last update & version 2012-11-27    v1.0
Availability Free to all users
University/Institution hosted Princeton University
Address Department of Ecology and Evolutionary Biology,Princeton University,Princeton,NJ,08542,USA
City Princeton
Province/State NJ
Country/Region United States
Contact name Aaron David Goldman
Contact email adg@princeton.edu
Data type(s)
Major organism(s)
Keyword(s)
  • LUCA related databases
Publication(s)
  • LUCApedia: a database for the study of ancient life. [PMID: 23193296]

    Aaron David Goldman, Tess M Bernhard, Egor Dolzhenko, Laura F Landweber
    Nucleic acids research 2013:41(Database issue)
    10 Citations (Google Scholar as of 2016-03-01)

    Abstract: Organisms represented by the root of the universal evolutionary tree were most likely complex cells with a sophisticated protein translation system and a DNA genome encoding hundreds of genes. The growth of bioinformatics data from taxonomically diverse organisms has made it possible to infer the likely properties of early life in greater detail. Here we present LUCApedia, (http://eeb.princeton.edu/lucapedia), a unified framework for simultaneously evaluating multiple data sets related to the Last Universal Common Ancestor (LUCA) and its predecessors. This unification is achieved by mapping eleven such data sets onto UniProt, KEGG and BioCyc IDs. LUCApedia may be used to rapidly acquire evidence that a certain gene or set of genes is ancient, to examine the early evolution of metabolic pathways, or to test specific hypotheses related to ancient life by corroborating them against the rest of the database.

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Tags

Protein
Homo sapiens
LUCA related databases

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Chunlei Yu [2016-04-01]
    • Chunlei Yu [2015-06-29]
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