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Database Commons - DBG2I

DBG2I

Citations: 37

z-index 2.53

Short name DBG2I
Full name Database for bacterial group II introns
Description Database for bacterial group II introns provides a catalogue of full-length,non-redundant group II introns present in bacterial DNA sequences in GenBank.
URL http://webapps2.ucalgary.ca/~groupii/index.html#
Year founded 2011
Last update & version 12/2/2014    v1.0
Availability Free to all users
University/Institution hosted University of Calgary
Address Department of Biological Sciences,University of Calgary,Calgary,Alberta T2N 1N4,Canada
City Calgary
Province/State Alberta
Country/Region Canada
Contact name Steven Zimmerly
Contact email zimmerly@ucalgary.ca
Data type(s)
Major organism(s)
Keyword(s)
  • GenBank
  • group ii introns
Publication(s)
  • Database for bacterial group II introns. [PMID: 22080509]

    Manuel A Candales, Adrian Duong, Keyar S Hood, Tony Li, Ryan A E Neufeld, Runda Sun, Bonnie A McNeil, Li Wu, Ashley M Jarding, Steven Zimmerly
    Nucleic acids research 2012:40(Database issue)
    37 Citations (Google Scholar as of 2016-04-28)

    Abstract: The Database for Bacterial Group II Introns (http://webapps2.ucalgary.ca/~groupii/index.html#) provides a catalogue of full-length, non-redundant group II introns present in bacterial DNA sequences in GenBank. The website is divided into three sections. The first section provides general information on group II intron properties, structures and classification. The second and main section lists information for individual introns, including insertion sites, DNA sequences, intron-encoded protein sequences and RNA secondary structure models. The final section provides tools for identification and analysis of intron sequences. These include a step-by-step guide to identify introns in genomic sequences, a local BLAST tool to identify closest intron relatives to a query sequence, and a boundary-finding tool that predicts 5' and 3' intron-exon junctions in an input DNA sequence. Finally, selected intron data can be downloaded in FASTA format. It is hoped that this database will be a useful resource not only to group II intron and RNA researchers, but also to microbiologists who encounter these unexpected introns in genomic sequences.

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Tags

DNA
Bacteria
GenBank group ii introns

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Jian Sang [2016-04-04]
    • Jian Sang [2015-12-01]
    • Jian Sang [2015-06-26]
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