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Database Commons - DAMPD

DAMPD

Citations: 39

z-index 3.44

Short name DAMPD
Full name Dragon Antimicrobial Peptide Database
Description DAMPD is a manually curated antimicrobial peptide database
URL http://apps.sanbi.ac.za/dampd/
Year founded 2011
Last update & version NA    v1.0
Availability Not Available
University/Institution hosted The University of the Western Cape
Address South African National Bioinformatics Institute,The University of the Western Cape,7535 Bellville,South Africa
City Bellville
Province/State
Country/Region South Africa
Contact name Vladimir B. Bajic
Contact email vladimir.bajic@kaust.edu.sa
Data type(s)
Major organism(s)
Keyword(s)
  • antimicrobial peptide
  • manual curation
Publication(s)
  • DAMPD: a manually curated antimicrobial peptide database. [PMID: 22110032]

    Vijayaraghava Seshadri Sundararajan, Musa Nur Gabere, Ashley Pretorius, Saleem Adam, Alan Christoffels, Minna Lehväslaiho, John A C Archer, Vladimir B Bajic
    Nucleic acids research 2012:40(Database issue)
    39 Citations (Google Scholar as of 2016-01-25)

    Abstract: The demand for antimicrobial peptides (AMPs) is rising because of the increased occurrence of pathogens that are tolerant or resistant to conventional antibiotics. Since naturally occurring AMPs could serve as templates for the development of new anti-infectious agents to which pathogens are not resistant, a resource that contains relevant information on AMP is of great interest. To that extent, we developed the Dragon Antimicrobial Peptide Database (DAMPD, http://apps.sanbi.ac.za/dampd) that contains 1232 manually curated AMPs. DAMPD is an update and a replacement of the ANTIMIC database. In DAMPD an integrated interface allows in a simple fashion querying based on taxonomy, species, AMP family, citation, keywords and a combination of search terms and fields (Advanced Search). A number of tools such as Blast, ClustalW, HMMER, Hydrocalculator, SignalP, AMP predictor, as well as a number of other resources that provide additional information about the results are also provided and integrated into DAMPD to augment biological analysis of AMPs.

Community reviews

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Accessibility

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200 OK2017-03-21
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200 OK2017-03-14
200 OK2017-03-10
200 OK2017-03-07
200 OK2017-03-03
200 OK2017-02-28
200 OK2017-02-24
200 OK2017-02-21
200 OK2017-02-17
200 OK2017-02-14
200 OK2017-02-10
200 OK2017-02-07
200 OK2017-02-03
200 OK2017-01-31
200 OK2017-01-27
200 OK2017-01-24
200 OK2017-01-20
200 OK2017-01-17
200 OK2017-01-13
200 OK2017-01-10
200 OK2017-01-06
200 OK2017-01-03
200 OK2016-12-30
200 OK2016-12-27
200 OK2016-12-23
200 OK2016-12-20
200 OK2016-12-16
200 OK2016-12-13
200 OK2016-12-09
-1 Failed2016-12-06
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200 OK2016-11-29
200 OK2016-11-25
200 OK2016-11-22
200 OK2016-11-18
200 OK2016-11-15
200 OK2016-11-11
200 OK2016-11-08
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200 OK2016-10-28
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Tags

Protein
Homo sapiens
antimicrobial peptide manual curation

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Jian Sang [2016-04-04]
    • Jian Sang [2015-12-01]
    • Jian Sang [2015-06-26]
Stats