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Database Commons - Phytozome

Phytozome

Citations: 746

z-index 23.62

Short name Phytozome
Full name The Plant Genomics Resource
Description Phytozome is the Plant Comparative Genomics portal of the Department of Energy's Joint Genome Institute. Families of related genes representing the modern descendants of ancestral genes are constructed at key phylogenetic nodes. These families allow easy access to clade-specific orthology/paralogy relationships as well as insights into clade-specific novelties and expansions.
URL http://phytozome.jgi.doe.gov/pz/portal.html
Year founded 2012
Last update & version 2016-03-11    v11
Availability Free to all users
University/Institution hosted Joint Genome Institute
Address Walnut Creek, California 94598, USA
City Walnut Creek
Province/State California
Country/Region United States
Contact name David M. Goodstein
Contact email vog.lbl@nietsdoogmd
Data type(s)
Major organism(s)
Keyword(s)
  • Comparative Genomics
  • gene annotation
Publication(s)
  • Phytozome: a comparative platform for green plant genomics. [PMID: 22110026]

    David M Goodstein, Shengqiang Shu, Russell Howson, Rochak Neupane, Richard D Hayes, Joni Fazo, Therese Mitros, William Dirks, Uffe Hellsten, Nicholas Putnam, Daniel S Rokhsar
    Nucleic acids research 2012:40(Database issue)
    746 Citations (Google Scholar as of 2016-01-27)

    Abstract: The number of sequenced plant genomes and associated genomic resources is growing rapidly with the advent of both an increased focus on plant genomics from funding agencies, and the application of inexpensive next generation sequencing. To interact with this increasing body of data, we have developed Phytozome (http://www.phytozome.net), a comparative hub for plant genome and gene family data and analysis. Phytozome provides a view of the evolutionary history of every plant gene at the level of sequence, gene structure, gene family and genome organization, while at the same time providing access to the sequences and functional annotations of a growing number (currently 25) of complete plant genomes, including all the land plants and selected algae sequenced at the Joint Genome Institute, as well as selected species sequenced elsewhere. Through a comprehensive plant genome database and web portal, these data and analyses are available to the broader plant science research community, providing powerful comparative genomics tools that help to link model systems with other plants of economic and ecological importance.

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Tags

DNA
Plant
Comparative Genomics gene annotation

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Shixiang Sun [2016-03-25]
    • Shixiang Sun [2015-11-21]
    • Shixiang Sun [2015-06-28]
    • Shixiang Sun [2015-06-26]
Stats