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Database Commons - DNAtraffic

DNAtraffic

Citations: 3

z-index 0.34

Short name DNAtraffic
Full name DNAtraffic
Description DNAtraffic database is dedicated to be an unique comprehensive and richly annotated database of genome dynamics during the cell life. DNAtraffic contains extensive data on the nomenclature, ontology, structure and function of proteins related to control of the DNA integrity mechanisms such as chromatin remodeling, DNA repair and damage response pathways from eight model organisms commonly used in the DNA-related study:
URL http://dnatraffic.ibb.waw.pl/
Year founded 2011
Last update & version NA    v1.0
Availability Free to all users
University/Institution hosted Institute of Biochemistry and Biophysics, Polish Academy of Sciences
Address Department of Molecular Biology,Institute of Biochemistry and Biophysics,Polish Academy of Sciences,Warsaw,Poland
City Warsaw
Province/State
Country/Region Poland
Contact name Joanna Krwawicz
Contact email joanna.krwawicz@gmail.com
Data type(s)
Major organism(s)
Keyword(s)
  • cell life
  • chromatin remodeling
  • genome dynamics
  • ontology
  • protein nomenclature
Publication(s)
  • DNAtraffic--a new database for systems biology of DNA dynamics during the cell life. [PMID: 22110027]

    Krzysztof Kuchta, Daniela Barszcz, Elzbieta Grzesiuk, Pawel Pomorski, Joanna Krwawicz
    Nucleic acids research 2012:40(Database issue)
    3 Citations (Google Scholar as of 2016-01-28)

    Abstract: DNAtraffic (http://dnatraffic.ibb.waw.pl/) is dedicated to be a unique comprehensive and richly annotated database of genome dynamics during the cell life. It contains extensive data on the nomenclature, ontology, structure and function of proteins related to the DNA integrity mechanisms such as chromatin remodeling, histone modifications, DNA repair and damage response from eight organisms: Homo sapiens, Mus musculus, Drosophila melanogaster, Caenorhabditis elegans, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Escherichia coli and Arabidopsis thaliana. DNAtraffic contains comprehensive information on the diseases related to the assembled human proteins. DNAtraffic is richly annotated in the systemic information on the nomenclature, chemistry and structure of DNA damage and their sources, including environmental agents or commonly used drugs targeting nucleic acids and/or proteins involved in the maintenance of genome stability. One of the DNAtraffic database aim is to create the first platform of the combinatorial complexity of DNA network analysis. Database includes illustrations of pathways, damage, proteins and drugs. Since DNAtraffic is designed to cover a broad spectrum of scientific disciplines, it has to be extensively linked to numerous external data sources. Our database represents the result of the manual annotation work aimed at making the DNAtraffic much more useful for a wide range of systems biology applications.

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Tags

DNA Metabolic and Signaling Pathway Protein RNA
Arabidopsis thaliana Caenorhabditis elegans Drosophila melanogaster Escherichia coli Homo sapiens Mus musculus Saccharomyces cerevisiae Schizosaccharomyces pombe
cell life chromatin remodeling genome dynamics ontology protein nomenclature

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Lina Ma [2017-08-02]
    • Jian Sang [2016-04-04]
    • Jian Sang [2015-12-07]
    • Jian Sang [2015-06-26]
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