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Database Commons - cBARBEL

cBARBEL

Citations: 26

z-index 1.34

Short name cBARBEL
Full name Catfish Genome Database
Description This site serves an entry portal for those interested in basic and applied genetics and genomics research of Ictalurid catfish.
URL http://catfishgenome.org/cbarbel/
Year founded 2010
Last update & version 2010-10    v1.0
Availability Free to all users
University/Institution hosted Auburn University
Address Auburn, AL 36849, USA
City Auburn
Province/State AL
Country/Region United States
Contact name Zhanjiang Liu
Contact email zliu@acesag.auburn.edu
Data type(s)
Major organism(s)
Keyword(s)
  • genome
Publication(s)
  • The catfish genome database cBARBEL: an informatic platform for genome biology of ictalurid catfish. [PMID: 20935046]

    Jianguo Lu, Eric Peatman, Qing Yang, Shaolin Wang, Zhiliang Hu, James Reecy, Huseyin Kucuktas, Zhanjiang Liu
    Nucleic acids research 2011:39(Database issue)
    26 Citations (Google Scholar as of 2016-05-01)

    Abstract: The catfish genome database, cBARBEL (abbreviated from catfish Breeder And Researcher Bioinformatics Entry Location) is an online open-access database for genome biology of ictalurid catfish (Ictalurus spp.). It serves as a comprehensive, integrative platform for all aspects of catfish genetics, genomics and related data resources. cBARBEL provides BLAST-based, fuzzy and specific search functions, visualization of catfish linkage, physical and integrated maps, a catfish EST contig viewer with SNP information overlay, and GBrowse-based organization of catfish genomic data based on sequence similarity with zebrafish chromosomes. Subsections of the database are tightly related, allowing a user with a sequence or search string of interest to navigate seamlessly from one area to another. As catfish genome sequencing proceeds and ongoing quantitative trait loci (QTL) projects bear fruit, cBARBEL will allow rapid data integration and dissemination within the catfish research community and to interested stakeholders. cBARBEL can be accessed at http://catfishgenome.org.

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Accessibility

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200 OK2016-02-22
200 OK2016-02-19
200 OK2016-02-17
200 OK2016-02-15
200 OK2016-02-14
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200 OK2016-01-29
200 OK2016-01-27
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200 OK2016-01-22
200 OK2016-01-20
200 OK2016-01-18
200 OK2016-01-17
200 OK2016-01-15
200 OK2016-01-13
200 OK2016-01-11
200 OK2016-01-10
200 OK2016-01-08
200 OK2016-01-06
200 OK2016-01-04

Tags

DNA Expression
Ictalurid catfish
genome

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Mengwei Li [2016-03-31]
    • Mengwei Li [2016-03-29]
    • Mengwei Li [2015-11-30]
    • Mengwei Li [2015-06-27]
Stats