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Database Commons - CGDSNPdb

CGDSNPdb

Citations: 7

z-index 0.00

Short name CGDSNPdb
Full name Center for Genome Dynamics Single Nucleotide Polymorphism Database
Description CGDSNPdb is a database resource for error-checked and imputed mouse SNPs.
URL http://cgd.jax.org/cgdsnpdb/
Year founded 2010
Last update & version NA    V 1.0
Availability Free to all users
University/Institution hosted The Jackson Laboratory
Address 600 Main Street,Bar Harbor,ME 04609,USA
City Bar Harbor
Province/State ME
Country/Region United States
Contact name Joel H. Graber
Contact email joel.graber@jax.org
Data type(s)
Major organism(s)
Keyword(s)
  • SNP
Publication(s)
  • CGDSNPdb: a database resource for error-checked and imputed mouse SNPs. [PMID: 20624716]

    Lucie N Hutchins, Yueming Ding, Jin P Szatkiewicz, Randy Von Smith, Hyuna Yang, Fernando Pardo-Manuel de Villena, Gary A Churchill, Joel H Graber
    Database : the journal of biological databases and curation 2010:2010
    7 Citations (Google Scholar as of 2016-01-17)

    Abstract: The Center for Genome Dynamics Single Nucleotide Polymorphism Database (CGDSNPdb) is an open-source value-added database with more than nine million mouse single nucleotide polymorphisms (SNPs), drawn from multiple sources, with genotypes assigned to multiple inbred strains of laboratory mice. All SNPs are checked for accuracy and annotated for properties specific to the SNP as well as those implied by changes to overlapping protein-coding genes. CGDSNPdb serves as the primary interface to two unique data sets, the 'imputed genotype resource' in which a Hidden Markov Model was used to assess local haplotypes and the most probable base assignment at several million genomic loci in tens of strains of mice, and the Affymetrix Mouse Diversity Genotyping Array, a high density microarray with over 600,000 SNPs and over 900,000 invariant genomic probes. CGDSNPdb is accessible online through either a web-based query tool or a MySQL public login. Database URL: http://cgd.jax.org/cgdsnpdb/

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Tags

DNA
Mus musculus
SNP

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Mengwei Li [2015-12-01]
    • Mengwei Li [2015-06-27]
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