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Database Commons - TRedD

TRedD

Citations: 12

z-index 0.54

Short name TRedD
Full name Tandem Repeats Database
Description A database for tandem repeats over the edit distance
URL http://tandem.sci.brooklyn.cuny.edu/
Year founded 2010
Last update & version NA    V 1.0
Availability Free to all users
University/Institution hosted The Graduate Center of the City University of New York
Address 2900 Bedford Avenue,Brooklyn,NY 11210,USA
City New York
Province/State
Country/Region United States
Contact name Dina Sokol
Contact email sokol@sci.brooklyn.cuny.edu
Data type(s)
Major organism(s)
Keyword(s)
  • tandem repeat
Publication(s)
  • TRedD--a database for tandem repeats over the edit distance. [PMID: 20624712]

    Dina Sokol, Firat Atagun
    Database : the journal of biological databases and curation 2010:2010
    12 Citations (Google Scholar as of 2016-01-17)

    Abstract: A 'tandem repeat' in DNA is a sequence of two or more contiguous, approximate copies of a pattern of nucleotides. Tandem repeats are common in the genomes of both eukaryotic and prokaryotic organisms. They are significant markers for human identity testing, disease diagnosis, sequence homology and population studies. In this article, we describe a new database, TRedD, which contains the tandem repeats found in the human genome. The database is publicly available online, and the software for locating the repeats is also freely available. The definition of tandem repeats used by TRedD is a new and innovative definition based upon the concept of 'evolutive tandem repeats'. In addition, we have developed a tool, called TandemGraph, to graphically depict the repeats occurring in a sequence. This tool can be coupled with any repeat finding software, and it should greatly facilitate analysis of results. Database URL: http://tandem.sci.brooklyn.cuny.edu/

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Tags

DNA
Homo sapiens
tandem repeat

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Guangyu Wang [2015-06-26]
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