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Database Commons - Varietas

Varietas

Citations: 8

z-index 0.00

Short name Varietas
Full name Varietas
Description a functional variation database portal
URL http://kokki.uku.fi/bioinformatics/varietas/
Year founded 2010
Last update & version 2010-01-29    v1.0
Availability Not Available
University/Institution hosted University of Eastern Finland
Address P.O. Box 1627,FIN-70211 Kuopio,Finland
City Kuopio
Province/State
Country/Region Finland
Contact name Jussi Paananen
Contact email jussi.paananen@uef.fi
Data type(s)
Major organism(s)
Keyword(s)
  • genomic variation
Publication(s)
  • Varietas: a functional variation database portal. [PMID: 20671203]

    Jussi Paananen, Robert Ciszek, Garry Wong
    Database : the journal of biological databases and curation 2010:2010
    8 Citations (Google Scholar as of 2016-01-18)

    Abstract: Current high-throughput technologies for investigating genomic variation in large population based samples produce data on a scale of millions of variations. Browsing through these results and identifying relevant functional variations is a major hurdle in these genome-wide association studies. In order to help researchers locate the most promising associations, we have developed a web-based database portal called Varietas. Varietas can be used for retrieving information concerning genomic variations such as single-nucleotide polymorphisms (SNPs), copy number variants and insertions/deletions, while enabling users to annotate large number of variations in a batch like manner and to find information about related genes, phenotypes and diseases. Varietas also links out to various external genomic databases, allowing users to quickly browse through a set of variations and follow the most promising leads. Varietas periodically integrates data from the major SNP and genome databases, including Ensembl genome database, NCBI dbSNP database, The Genomic Association Database and SNPedia. Database URL: http://kokki.uku.fi/bioinformatics/varietas/

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Tags

Disease DNA Phenotype
Homo sapiens
genomic variation

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Hongyan Yin [2016-03-31]
    • Hongyan Yin [2015-11-22]
    • Hongyan Yin [2015-06-26]
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